Variant report

Variant	rs1157188
Chromosome Location	chr4:150215098-150215099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11099727	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12374208	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12374271	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13103522	0.84[AFR][1000 genomes]
rs13118544	0.83[AFR][1000 genomes]
rs13135997	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13141615	0.81[AFR][1000 genomes]
rs13141632	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141927	0.81[AFR][1000 genomes]
rs1319110	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17624426	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17686333	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34737891	0.83[AFR][1000 genomes]
rs35692179	0.83[AFR][1000 genomes]
rs35918692	0.83[AFR][1000 genomes]
rs36016999	0.83[AFR][1000 genomes]
rs4629424	0.81[AFR][1000 genomes]
rs4835575	0.83[AFR][1000 genomes]
rs56112611	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59501220	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6535674	0.83[AFR][1000 genomes]
rs67730534	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6829488	0.86[AFR][1000 genomes]
rs6845814	0.85[AFR][1000 genomes]
rs6847475	0.83[AFR][1000 genomes]
rs6855590	0.86[AFR][1000 genomes]
rs71622754	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs725653	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72721875	0.91[ASN][1000 genomes]
rs72721883	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72721885	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72721895	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72724014	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72724016	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72724017	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72724018	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72724021	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72724022	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72724023	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72724025	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72724036	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150212400-150215200	Enhancers	Fetal Stomach	stomach
2	chr4:150213800-150215400	Enhancers	Fetal Muscle Leg	muscle
3	chr4:150214200-150216600	Weak transcription	HSMMtube	muscle

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