Variant report

Variant	rs6845814
Chromosome Location	chr4:150215590-150215591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1157188	0.85[AFR][1000 genomes]
rs13103522	0.97[AFR][1000 genomes]
rs13118544	0.96[AFR][1000 genomes]
rs13141615	0.94[AFR][1000 genomes]
rs13141927	0.94[AFR][1000 genomes]
rs1319110	0.81[AFR][1000 genomes]
rs17026127	0.81[AFR][1000 genomes]
rs34737891	0.96[AFR][1000 genomes]
rs35692179	0.96[AFR][1000 genomes]
rs35918692	0.96[AFR][1000 genomes]
rs36016999	0.96[AFR][1000 genomes]
rs4629424	0.93[AFR][1000 genomes]
rs4835575	0.96[AFR][1000 genomes]
rs6535674	0.96[AFR][1000 genomes]
rs6829488	0.99[AFR][1000 genomes]
rs6847475	0.96[AFR][1000 genomes]
rs6855590	0.99[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs71618313	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150214200-150216600	Weak transcription	HSMMtube	muscle
2	chr4:150215400-150216400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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