Variant report

Variant	rs35083862
Chromosome Location	chr9:7194593-7194594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7193931..7197834-chr9:7198175..7201948,5	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10115707	0.91[ASN][1000 genomes]
rs10121668	0.91[ASN][1000 genomes]
rs10511463	0.88[EUR][1000 genomes]
rs10976093	0.93[ASN][1000 genomes]
rs10976103	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976104	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976105	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976106	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976107	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976108	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976109	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976110	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10976111	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11791749	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11791819	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11794430	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12000784	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12004035	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12004053	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12349798	0.93[ASN][1000 genomes]
rs16925516	0.89[ASN][1000 genomes]
rs16925520	0.89[ASN][1000 genomes]
rs2770750	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2770753	0.83[AFR][1000 genomes]
rs2770755	0.81[EUR][1000 genomes]
rs2820912	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2820913	0.81[EUR][1000 genomes]
rs2820914	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34355058	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34417327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953607	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35266003	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35605218	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36014488	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60227552	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61635861	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7023703	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7035093	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7037553	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7038976	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7043377	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7043782	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7047530	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7855802	0.91[ASN][1000 genomes]
rs7861453	0.91[ASN][1000 genomes]
rs913583	0.91[ASN][1000 genomes]
rs932882	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1020908	chr9:7188471-7358893	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv539973	chr9:7188471-7358893	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1021049	chr9:7192313-7288729	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7191200-7196600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:7192600-7201400	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links