Variant report

Variant	rs35255
Chromosome Location	chr5:58626129-58626130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs151802	0.95[CHB][hapmap]
rs154027	1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[ASN][1000 genomes]
rs154028	0.95[CHB][hapmap]
rs185333	0.95[CHB][hapmap]
rs244575	0.81[CEU][hapmap]
rs244584	0.86[ASN][1000 genomes]
rs244585	0.86[ASN][1000 genomes]
rs258121	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs35259	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35260	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35262	0.95[CHB][hapmap]
rs35265	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs35275	0.95[CHB][hapmap]
rs35281	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs35282	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[ASN][1000 genomes]
rs35285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35286	0.95[CHB][hapmap]
rs35287	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs441683	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58612800-58627200	Weak transcription	Aorta	Aorta
2	chr5:58613600-58626600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:58613600-58628600	Weak transcription	Gastric	stomach
4	chr5:58618800-58629000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:58621400-58626200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:58623400-58628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:58623800-58627800	Enhancers	Fetal Heart	heart
8	chr5:58624200-58626200	Enhancers	Hela-S3	cervix
9	chr5:58624600-58630000	Weak transcription	Fetal Intestine Small	intestine
10	chr5:58625000-58626200	Weak transcription	Right Atrium	heart
11	chr5:58625000-58626600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:58625000-58627000	Weak transcription	Fetal Brain Male	brain
13	chr5:58625000-58627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:58625000-58627200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:58625000-58628400	Weak transcription	Brain Angular Gyrus	brain
16	chr5:58625000-58628400	Weak transcription	Fetal Stomach	stomach
17	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
21	chr5:58625200-58626200	Weak transcription	Psoas Muscle	Psoas
22	chr5:58625200-58627200	Weak transcription	Right Ventricle	heart
23	chr5:58625200-58628200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:58625400-58626600	Enhancers	A549	lung
25	chr5:58625400-58628400	Weak transcription	Fetal Lung	lung
26	chr5:58625400-58630800	Weak transcription	Colon Smooth Muscle	Colon

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