Variant report

Variant	rs35286
Chromosome Location	chr5:58658144-58658145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151802	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs154025	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154027	0.95[CHB][hapmap]
rs154028	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs185333	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs244567	0.83[EUR][1000 genomes]
rs258107	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs258119	0.88[EUR][1000 genomes]
rs258120	0.84[EUR][1000 genomes]
rs35255	0.95[CHB][hapmap]
rs35259	0.82[CHB][hapmap]
rs35260	0.82[CHB][hapmap]
rs35262	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35264	0.89[ASN][1000 genomes]
rs35265	0.81[CHB][hapmap]
rs35275	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs35280	0.90[ASN][1000 genomes]
rs35281	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35282	0.95[CHB][hapmap]
rs35285	0.95[CHB][hapmap]
rs35287	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs372309	0.93[EUR][1000 genomes]
rs377451	0.91[EUR][1000 genomes]
rs389324	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs40125	0.82[CHB][hapmap]
rs403687	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs441683	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs525099	0.92[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030716	chr5:58636116-58718362	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032732	chr5:58637179-58689010	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1022160	chr5:58645805-58689010	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881704	chr5:58653383-58675538	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58653000-58669400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:58654400-58667000	Weak transcription	Fetal Intestine Large	intestine
3	chr5:58654600-58665400	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:58654800-58659400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:58654800-58665800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:58655000-58659200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:58655000-58659600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:58656200-58665400	Weak transcription	Psoas Muscle	Psoas
9	chr5:58656400-58658200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:58656400-58658600	Weak transcription	Fetal Lung	lung
11	chr5:58656400-58658600	Weak transcription	Left Ventricle	heart
12	chr5:58656400-58659400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:58656400-58659400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:58656600-58662200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:58656800-58658800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:58657000-58659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:58657800-58661800	Weak transcription	Fetal Heart	heart
18	chr5:58657800-58661800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:58658000-58658600	Enhancers	A549	lung
20	chr5:58658000-58659600	Enhancers	Colon Smooth Muscle	Colon

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