Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58631024..58631593-chr5:58663326..58663872,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151802	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs154025	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154027	0.95[CHB][hapmap]
rs154028	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs185333	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs244567	0.83[EUR][1000 genomes]
rs258107	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs258119	0.87[EUR][1000 genomes]
rs258120	0.83[EUR][1000 genomes]
rs35255	0.95[CHB][hapmap]
rs35259	0.82[CHB][hapmap]
rs35260	0.82[CHB][hapmap]
rs35264	0.93[ASN][1000 genomes]
rs35265	0.81[CHB][hapmap]
rs35275	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs35280	0.92[ASN][1000 genomes]
rs35281	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35282	0.95[CHB][hapmap]
rs35285	0.95[CHB][hapmap]
rs35286	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35287	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs372309	0.92[EUR][1000 genomes]
rs377451	0.91[EUR][1000 genomes]
rs389324	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs40125	0.82[CHB][hapmap]
rs403687	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs441683	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs525099	0.88[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
5	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:58630000-58631200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:58630800-58631800	Enhancers	Colon Smooth Muscle	Colon
9	chr5:58631000-58631200	Enhancers	Fetal Lung	lung
10	chr5:58631000-58631400	Enhancers	Psoas Muscle	Psoas
11	chr5:58631000-58632200	Enhancers	Brain Hippocampus Middle	brain
12	chr5:58631000-58633600	Enhancers	Brain Substantia Nigra	brain
13	chr5:58631000-58635800	Enhancers	A549	lung
14	chr5:58631000-58636000	Enhancers	Fetal Heart	heart

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