Variant report

Variant	rs35264
Chromosome Location	chr5:58629092-58629093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12517657	0.82[EUR][1000 genomes]
rs151802	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154025	0.93[ASN][1000 genomes]
rs154027	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs154028	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs185333	0.93[ASN][1000 genomes]
rs244584	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs244585	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35262	0.93[ASN][1000 genomes]
rs35265	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35266	0.94[EUR][1000 genomes]
rs35275	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35280	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35282	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35286	0.89[ASN][1000 genomes]
rs35287	0.88[ASN][1000 genomes]
rs40125	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58624600-58630000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
6	chr5:58625400-58630800	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:58626200-58629400	Weak transcription	Hela-S3	cervix
8	chr5:58626600-58629200	Genic enhancers	A549	lung
9	chr5:58626800-58631000	Weak transcription	Psoas Muscle	Psoas
10	chr5:58627200-58630000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:58628200-58629400	Enhancers	Fetal Heart	heart
14	chr5:58628400-58629600	Enhancers	Fetal Lung	lung
15	chr5:58628800-58629200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:58629000-58629400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links