Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12517657	0.83[EUR][1000 genomes]
rs151802	1.00[CEU][hapmap];0.80[CHB][hapmap];0.98[EUR][1000 genomes]
rs154027	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs154028	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes]
rs244584	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs244585	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35255	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs35259	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs35260	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs35262	0.81[CHB][hapmap]
rs35264	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35266	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs35275	0.95[CEU][hapmap];0.80[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35280	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35281	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs35282	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35285	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs35286	0.81[CHB][hapmap]
rs35287	0.80[CHB][hapmap]
rs40125	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs441683	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58613600-58628600	Weak transcription	Gastric	stomach
2	chr5:58618800-58629000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:58623400-58628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:58624600-58630000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:58625000-58628400	Weak transcription	Brain Angular Gyrus	brain
6	chr5:58625000-58628400	Weak transcription	Fetal Stomach	stomach
7	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
11	chr5:58625200-58628200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:58625400-58628400	Weak transcription	Fetal Lung	lung
13	chr5:58625400-58630800	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:58626200-58629400	Weak transcription	Hela-S3	cervix
15	chr5:58626600-58629200	Genic enhancers	A549	lung
16	chr5:58626800-58631000	Weak transcription	Psoas Muscle	Psoas
17	chr5:58627200-58630000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:58627400-58628600	Weak transcription	Right Atrium	heart
20	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:58627800-58628200	Weak transcription	Fetal Heart	heart

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