Variant report

Variant	rs353633
Chromosome Location	chr11:35185488-35185489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35184295..35186190-chr11:35191742..35193747,2	MCF-7	breast:
2	chr11:35160028..35162902-chr11:35183937..35186481,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs353625	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs353634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756195	0.90[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7928464	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3693078	chr11:35179651-35217745	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35161200-35197400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr11:35167400-35185800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:35167600-35186200	Genic enhancers	NHDF-Ad	bronchial
4	chr11:35167600-35186400	Genic enhancers	HMEC	breast
5	chr11:35167800-35185800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:35172200-35196000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:35177600-35191000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:35177800-35186600	Genic enhancers	Osteobl	bone
9	chr11:35179000-35186200	Genic enhancers	Hela-S3	cervix
10	chr11:35179000-35186400	Genic enhancers	NHLF	lung
11	chr11:35179200-35185800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:35179400-35187200	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr11:35179600-35188000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:35180600-35186600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:35180600-35187800	Weak transcription	Lung	lung
16	chr11:35180600-35188000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:35180800-35186200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:35180800-35186400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:35180800-35187800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:35180800-35189400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:35181000-35186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:35181000-35187200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:35181000-35187600	Weak transcription	HSMMtube	muscle
24	chr11:35181200-35186200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:35181200-35186800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:35181400-35186600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:35181400-35187600	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:35181600-35187600	Weak transcription	Brain Substantia Nigra	brain
29	chr11:35181800-35187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:35182000-35186400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:35182200-35188000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:35182400-35186000	Enhancers	Aorta	Aorta
33	chr11:35182400-35186400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:35182600-35190200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:35182800-35188200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:35183000-35185600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:35183000-35186000	Genic enhancers	NH-A	brain
38	chr11:35183000-35186400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:35183000-35187000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:35183000-35187200	Enhancers	Thymus	Thymus
41	chr11:35183000-35188000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:35183200-35185600	Enhancers	Placenta	Placenta
43	chr11:35183200-35188000	Enhancers	Adipose Nuclei	Adipose
44	chr11:35183400-35187000	Enhancers	Primary B cells from peripheral blood	blood
45	chr11:35183600-35186200	Genic enhancers	HSMM	muscle
46	chr11:35183600-35186400	Enhancers	Dnd41	blood
47	chr11:35183600-35187600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:35183800-35186200	Enhancers	Fetal Kidney	kidney
49	chr11:35183800-35186600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:35183800-35186800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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