Variant report

Variant	rs35367106
Chromosome Location	chr6:86177369-86177370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:72494849..72496352-chr6:86176063..86177563,2	MCF-7	breast:
2	chr6:86168492..86171054-chr6:86176309..86178352,2	K562	blood:
3	chr6:86165562..86167766-chr6:86176895..86178725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163602	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13194512	0.91[EUR][1000 genomes]
rs13198956	0.91[EUR][1000 genomes]
rs13202606	1.00[EUR][1000 genomes]
rs16876340	0.91[EUR][1000 genomes]
rs16876385	0.91[EUR][1000 genomes]
rs1793	0.91[EUR][1000 genomes]
rs34239697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898046	0.91[EUR][1000 genomes]
rs34936540	0.91[EUR][1000 genomes]
rs35694036	0.91[EUR][1000 genomes]
rs35988746	0.91[EUR][1000 genomes]
rs36088473	0.91[EUR][1000 genomes]
rs3734442	0.91[EUR][1000 genomes]
rs3900740	0.91[EUR][1000 genomes]
rs4707206	0.91[EUR][1000 genomes]
rs4707213	0.91[EUR][1000 genomes]
rs55648312	0.91[EUR][1000 genomes]
rs55810446	0.91[EUR][1000 genomes]
rs55924871	0.91[ASN][1000 genomes]
rs67493405	0.91[EUR][1000 genomes]
rs6906121	0.91[EUR][1000 genomes]
rs6909402	0.91[EUR][1000 genomes]
rs6909654	0.91[EUR][1000 genomes]
rs6915519	0.87[EUR][1000 genomes]
rs71570763	0.84[EUR][1000 genomes]
rs71570764	0.91[EUR][1000 genomes]
rs71570766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903409	0.82[ASN][1000 genomes]
rs72903416	0.91[ASN][1000 genomes]
rs72903421	0.91[ASN][1000 genomes]
rs7738371	0.91[EUR][1000 genomes]
rs7740830	0.91[EUR][1000 genomes]
rs7742792	0.81[EUR][1000 genomes]
rs7771577	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv520112	chr6:86144875-86247759	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86171800-86185200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:86171800-86186000	Weak transcription	Fetal Stomach	stomach
3	chr6:86171800-86187600	Weak transcription	Colonic Mucosa	Colon
4	chr6:86172000-86179000	Weak transcription	Pancreas	Pancrea
5	chr6:86172200-86179800	Weak transcription	Left Ventricle	heart
6	chr6:86172200-86186000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:86172400-86178000	Weak transcription	Aorta	Aorta
8	chr6:86172400-86192800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:86174600-86178600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:86174600-86180200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:86174800-86178000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:86174800-86179800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:86174800-86180400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:86175000-86180000	Genic enhancers	HSMM	muscle
15	chr6:86175200-86180000	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr6:86175400-86180000	Genic enhancers	NHEK	skin
17	chr6:86175400-86180200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:86175400-86180200	Genic enhancers	NHLF	lung
19	chr6:86175600-86177800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:86175600-86177800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:86175600-86178000	Weak transcription	HSMMtube	muscle
22	chr6:86175600-86178200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:86175600-86178200	Weak transcription	Ovary	ovary
24	chr6:86175600-86191800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:86176000-86178200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:86176000-86179000	Weak transcription	Lung	lung
27	chr6:86176000-86180600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:86176000-86183800	Genic enhancers	NHDF-Ad	bronchial
29	chr6:86176200-86177800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:86176200-86178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:86176200-86178000	Strong transcription	Osteobl	bone
32	chr6:86176200-86178400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr6:86176200-86179200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:86176200-86183000	Weak transcription	Primary T cells from cord blood	blood
35	chr6:86176200-86187000	Strong transcription	Liver	Liver
36	chr6:86176200-86192400	Weak transcription	A549	lung
37	chr6:86176200-86192600	Weak transcription	HepG2	liver
38	chr6:86176400-86177800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:86176400-86177800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:86176400-86177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:86176400-86177800	Strong transcription	HMEC	breast
42	chr6:86176400-86178000	Weak transcription	HUVEC	blood vessel
43	chr6:86176400-86179400	Weak transcription	Spleen	Spleen
44	chr6:86176600-86178000	Weak transcription	Hela-S3	cervix
45	chr6:86176600-86191400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:86176800-86177800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:86176800-86177800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:86176800-86178600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:86176800-86178600	Strong transcription	NH-A	brain
50	chr6:86176800-86242600	Weak transcription	Gastric	stomach

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