Variant report

Variant	rs3734442
Chromosome Location	chr6:86161269-86161270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:86160188..86163833-chr6:86163850..86166659,4	MCF-7	breast:
2	chr6:86156006..86158396-chr6:86159870..86162328,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13194512	1.00[EUR][1000 genomes]
rs13198956	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs13202606	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs16876230	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16876340	0.85[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs16876385	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs1793	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs34239697	0.91[EUR][1000 genomes]
rs34898046	1.00[EUR][1000 genomes]
rs34936540	1.00[EUR][1000 genomes]
rs35367106	0.91[EUR][1000 genomes]
rs35694036	1.00[EUR][1000 genomes]
rs35988746	0.83[EUR][1000 genomes]
rs36088473	1.00[EUR][1000 genomes]
rs3900740	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs4707206	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707213	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs55648312	1.00[EUR][1000 genomes]
rs55810446	1.00[EUR][1000 genomes]
rs67493405	1.00[EUR][1000 genomes]
rs6906121	1.00[EUR][1000 genomes]
rs6909402	1.00[EUR][1000 genomes]
rs6909654	1.00[EUR][1000 genomes]
rs6910641	0.85[EUR][1000 genomes]
rs6915519	0.96[EUR][1000 genomes]
rs71570763	0.92[EUR][1000 genomes]
rs71570764	1.00[EUR][1000 genomes]
rs71570766	0.91[EUR][1000 genomes]
rs7738371	1.00[EUR][1000 genomes]
rs7740830	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs7742792	0.91[EUR][1000 genomes]
rs7771577	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv520112	chr6:86144875-86247759	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86157800-86162200	Active TSS	Stomach Smooth Muscle	stomach
2	chr6:86157800-86162400	Active TSS	Colon Smooth Muscle	Colon
3	chr6:86158000-86162000	Active TSS	Aorta	Aorta
4	chr6:86158200-86162600	Active TSS	NHLF	lung
5	chr6:86158400-86162600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:86158600-86161400	Active TSS	Psoas Muscle	Psoas
7	chr6:86158600-86161400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:86158600-86161600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:86158600-86161600	Active TSS	Ovary	ovary
10	chr6:86158800-86161400	Active TSS	NH-A	brain
11	chr6:86158800-86161400	Active TSS	Osteobl	bone
12	chr6:86158800-86161600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:86158800-86161600	Active TSS	A549	lung
14	chr6:86158800-86161600	Active TSS	HMEC	breast
15	chr6:86158800-86161600	Active TSS	HSMM	muscle
16	chr6:86158800-86161600	Active TSS	HSMMtube	muscle
17	chr6:86158800-86162000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:86158800-86162000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:86158800-86162000	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:86158800-86162000	Active TSS	GM12878-XiMat	blood
21	chr6:86158800-86162600	Active TSS	NHDF-Ad	bronchial
22	chr6:86159000-86161400	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:86159000-86161400	Active TSS	NHEK	skin
24	chr6:86159000-86161600	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr6:86159000-86161800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:86159000-86162800	Flanking Active TSS	Liver	Liver
27	chr6:86159200-86161600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:86159400-86162200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:86159400-86162200	Active TSS	Brain Angular Gyrus	brain
30	chr6:86160000-86164200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
31	chr6:86160200-86161600	Active TSS	Right Atrium	heart
32	chr6:86160200-86161800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:86160400-86161800	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:86160400-86161800	Active TSS	Fetal Muscle Trunk	muscle
35	chr6:86160600-86161800	Active TSS	Brain Hippocampus Middle	brain
36	chr6:86160600-86161800	Active TSS	Placenta	Placenta
37	chr6:86160600-86162000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:86160600-86162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:86160600-86162600	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr6:86160600-86162800	Weak transcription	Spleen	Spleen
41	chr6:86160600-86163000	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:86160600-86163000	Weak transcription	Right Ventricle	heart
43	chr6:86160600-86163600	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr6:86160600-86163600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:86160600-86164600	Weak transcription	Pancreas	Pancrea
46	chr6:86160600-86168000	Weak transcription	Lung	lung
47	chr6:86160600-86171400	Weak transcription	Gastric	stomach
48	chr6:86160800-86161400	Enhancers	Fetal Intestine Small	intestine
49	chr6:86160800-86161400	Active TSS	Fetal Stomach	stomach
50	chr6:86160800-86161400	Active TSS	HepG2	liver

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