Variant report

Variant	rs35409502
Chromosome Location	chr1:160849161-160849162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57532622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60719109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160846600-160849400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:160847200-160852400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:160847400-160849200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:160847600-160849200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:160847600-160853800	Weak transcription	Spleen	Spleen
7	chr1:160848200-160849400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:160848400-160849400	Enhancers	Fetal Thymus	thymus
9	chr1:160848400-160849600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:160848600-160849400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:160848600-160849600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:160848600-160851200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr1:160848800-160849200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:160849000-160849200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr1:160849000-160849800	Enhancers	Ovary	ovary
16	chr1:160849000-160852200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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