Variant report

Variant	rs6701920
Chromosome Location	chr1:160914917-160914918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35409502	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57532622	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710130	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60719109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686413	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160905800-160919800	Weak transcription	Right Atrium	heart
2	chr1:160911400-160915800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:160911800-160915000	Weak transcription	Gastric	stomach
4	chr1:160911800-160915000	Weak transcription	Ovary	ovary
5	chr1:160911800-160920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:160913000-160915200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:160913200-160916400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:160913200-160916800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:160913400-160915200	Weak transcription	Hela-S3	cervix
10	chr1:160914200-160915200	Weak transcription	A549	lung
11	chr1:160914600-160915400	Enhancers	Fetal Heart	heart
12	chr1:160914800-160915000	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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