Variant report

Variant	rs6686413
Chromosome Location	chr1:160875321-160875322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35409502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57532622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60719109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701920	0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160870200-160875600	Weak transcription	Spleen	Spleen
2	chr1:160873600-160877200	Enhancers	Ovary	ovary
3	chr1:160874200-160875400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:160874200-160875800	Enhancers	Right Atrium	heart
5	chr1:160874400-160875400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:160874400-160875600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:160874400-160875800	Enhancers	Fetal Intestine Large	intestine
8	chr1:160874400-160876000	Enhancers	Stomach Mucosa	stomach
9	chr1:160874600-160875400	Enhancers	Fetal Intestine Small	intestine
10	chr1:160874600-160875600	Enhancers	Pancreas	Pancrea
11	chr1:160874600-160875800	Enhancers	Right Ventricle	heart
12	chr1:160875000-160875400	Enhancers	Left Ventricle	heart
13	chr1:160875000-160875800	Flanking Active TSS	Fetal Heart	heart
14	chr1:160875000-160876000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:160875200-160875400	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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