Variant report

Variant	rs57532622
Chromosome Location	chr1:160858195-160858196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35409502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60719109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701920	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160853600-160858800	Weak transcription	Gastric	stomach
2	chr1:160855400-160860200	Weak transcription	Fetal Heart	heart
3	chr1:160857800-160858800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:160857800-160858800	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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