Variant report

Variant	rs35467195
Chromosome Location	chr3:142451529-142451530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142440764..142447351-chr3:142447876..142453458,13	K562	blood:
2	chr3:142451473..142453239-chr3:142462365..142465302,2	K562	blood:
3	chr3:142450124..142452703-chr3:142455616..142457885,2	K562	blood:
4	chr3:142429711..142432436-chr3:142449677..142451639,2	K562	blood:

Variant related genes	Relation type
ENSG00000144935	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11715459	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717993	0.89[ASN][1000 genomes]
rs11915805	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2049328	0.93[ASN][1000 genomes]
rs2354856	0.89[ASN][1000 genomes]
rs28571594	0.86[AMR][1000 genomes]
rs28658009	0.89[ASN][1000 genomes]
rs34445140	0.89[ASN][1000 genomes]
rs35862982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4530572	0.93[ASN][1000 genomes]
rs4539980	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55722370	0.89[ASN][1000 genomes]
rs55722917	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56666685	0.84[ASN][1000 genomes]
rs56775607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57026466	0.89[ASN][1000 genomes]
rs60294656	0.89[ASN][1000 genomes]
rs60319320	0.89[ASN][1000 genomes]
rs60752859	0.89[ASN][1000 genomes]
rs6440104	0.84[AMR][1000 genomes]
rs6440106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440107	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66897945	0.89[ASN][1000 genomes]
rs6777466	0.89[ASN][1000 genomes]
rs6784998	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6790959	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6798849	0.89[ASN][1000 genomes]
rs73232711	0.84[ASN][1000 genomes]
rs7623762	0.86[AMR][1000 genomes]
rs7623977	0.89[ASN][1000 genomes]
rs7626908	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7628728	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7629129	0.83[AMR][1000 genomes]
rs7635768	0.93[ASN][1000 genomes]
rs7637826	0.93[ASN][1000 genomes]
rs7637846	0.88[ASN][1000 genomes]
rs7641514	0.84[ASN][1000 genomes]
rs7642332	0.89[ASN][1000 genomes]
rs7644704	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7646197	0.89[ASN][1000 genomes]
rs7647291	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs953239	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9758429	0.89[ASN][1000 genomes]
rs9815607	0.88[ASN][1000 genomes]
rs9820721	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9823836	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9861598	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9865053	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9868886	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142444000-142452600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142444200-142467400	Weak transcription	HSMM	muscle
3	chr3:142444400-142454400	Weak transcription	Ovary	ovary
4	chr3:142444400-142467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:142444400-142469600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:142444600-142453800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:142444600-142454200	Weak transcription	NHLF	lung
8	chr3:142444600-142467200	Weak transcription	NH-A	brain
9	chr3:142445000-142467400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:142445000-142467800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:142445000-142479000	Weak transcription	Fetal Brain Female	brain
12	chr3:142445200-142467000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:142445200-142467000	Weak transcription	NHDF-Ad	bronchial
14	chr3:142445200-142467000	Weak transcription	Osteobl	bone
15	chr3:142445200-142467200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:142445200-142467400	Weak transcription	HMEC	breast
17	chr3:142445400-142467200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:142445800-142467400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:142446000-142467000	Weak transcription	A549	lung
20	chr3:142446400-142467200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:142448400-142455200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:142449800-142454200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:142450000-142454000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:142450200-142467000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:142450600-142451600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr3:142450800-142451600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:142450800-142452000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr3:142450800-142452000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:142451000-142452000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:142451000-142452000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr3:142451200-142451600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:142451200-142451800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr3:142451400-142451600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:142451400-142452600	Weak transcription	Left Ventricle	heart
35	chr3:142451400-142467200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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