Variant report

Variant	rs7637826
Chromosome Location	chr3:142468495-142468496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11715459	0.87[ASN][1000 genomes]
rs11717993	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11915805	0.95[ASN][1000 genomes]
rs1382688	0.91[EUR][1000 genomes]
rs1871349	0.83[EUR][1000 genomes]
rs2033912	0.91[EUR][1000 genomes]
rs2049328	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177398	0.91[EUR][1000 genomes]
rs2354856	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28658009	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28661660	0.83[EUR][1000 genomes]
rs28689551	0.91[EUR][1000 genomes]
rs34076811	0.84[EUR][1000 genomes]
rs34445140	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35467195	0.93[ASN][1000 genomes]
rs35862982	0.95[ASN][1000 genomes]
rs4530572	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4643748	0.91[EUR][1000 genomes]
rs55722370	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56666685	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56775607	0.95[ASN][1000 genomes]
rs57026466	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59108985	0.91[EUR][1000 genomes]
rs60294656	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60319320	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60752859	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6440105	0.81[EUR][1000 genomes]
rs6440106	0.91[ASN][1000 genomes]
rs6440108	0.91[EUR][1000 genomes]
rs6440110	0.89[EUR][1000 genomes]
rs66897945	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67100994	0.81[EUR][1000 genomes]
rs6772222	0.91[EUR][1000 genomes]
rs6777466	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791501	0.84[EUR][1000 genomes]
rs6798849	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6803681	0.91[EUR][1000 genomes]
rs6807862	0.82[EUR][1000 genomes]
rs73232711	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621642	0.91[EUR][1000 genomes]
rs7623977	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7635768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637846	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7638459	0.91[EUR][1000 genomes]
rs7639403	0.91[EUR][1000 genomes]
rs7641514	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7642332	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7646197	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7653309	0.95[EUR][1000 genomes]
rs7772	0.84[EUR][1000 genomes]
rs953239	0.91[ASN][1000 genomes]
rs953641	0.82[EUR][1000 genomes]
rs9754885	0.84[EUR][1000 genomes]
rs9758429	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9815607	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9824476	0.91[EUR][1000 genomes]
rs9835135	0.91[EUR][1000 genomes]
rs9836269	0.91[EUR][1000 genomes]
rs9849461	0.91[EUR][1000 genomes]
rs9864230	0.91[EUR][1000 genomes]
rs9868886	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142444400-142469600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:142445000-142479000	Weak transcription	Fetal Brain Female	brain
3	chr3:142452800-142489000	Weak transcription	Aorta	Aorta
4	chr3:142458000-142482800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:142459000-142470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:142461800-142470600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:142464800-142493200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:142465000-142469000	Weak transcription	K562	blood
9	chr3:142465600-142471800	Weak transcription	HepG2	liver
10	chr3:142466000-142469600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:142466000-142488400	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:142466200-142474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:142466400-142478200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:142466400-142479000	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:142467000-142469800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:142467200-142468600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:142467200-142468800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:142467200-142468800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:142467200-142468800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:142467200-142469200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:142467200-142469600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:142467200-142470600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:142467400-142468600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:142467600-142468600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:142467600-142469600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:142467800-142503400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:142468000-142470000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:142468000-142486800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:142468200-142469800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:142468200-142470000	Weak transcription	Brain Substantia Nigra	brain
31	chr3:142468200-142486800	Weak transcription	Brain Anterior Caudate	brain
32	chr3:142468200-142487600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:142468200-142489800	Weak transcription	Ovary	ovary
34	chr3:142468200-142511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:142468400-142468600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:142468400-142469800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:142468400-142471000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr3:142468400-142471200	Weak transcription	Osteobl	bone
40	chr3:142468400-142475200	Weak transcription	HMEC	breast
41	chr3:142468400-142480400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:142468400-142480800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:142468400-142483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:142468400-142483200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:142468400-142484000	Weak transcription	Fetal Lung	lung
46	chr3:142468400-142488200	Weak transcription	A549	lung
47	chr3:142468400-142489800	Weak transcription	NH-A	brain
48	chr3:142468400-142498000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:142468400-142501400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:142468400-142501400	Weak transcription	HSMM	muscle

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