Variant report

Variant	rs9815607
Chromosome Location	chr3:142510348-142510349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142502229..142505111-chr3:142507605..142510534,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1132030	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11715459	0.94[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11717993	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11915805	0.90[ASN][1000 genomes]
rs1382688	1.00[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871349	0.91[EUR][1000 genomes]
rs2033912	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2049328	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2177398	1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2354856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28524951	0.84[EUR][1000 genomes]
rs28658009	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28661660	0.91[EUR][1000 genomes]
rs28689551	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34076811	0.91[EUR][1000 genomes]
rs34445140	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35467195	0.88[ASN][1000 genomes]
rs35862982	0.90[ASN][1000 genomes]
rs3821647	0.87[CEU][hapmap];0.88[CHB][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs3844273	0.94[MEX][hapmap];0.86[TSI][hapmap]
rs4259003	0.88[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4530572	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs45497994	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4643748	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55722370	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56666685	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56775607	0.90[ASN][1000 genomes]
rs57026466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59108985	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60294656	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60319320	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60752859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440104	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap]
rs6440106	0.86[ASN][1000 genomes]
rs6440107	0.83[YRI][hapmap]
rs6440108	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440110	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66897945	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67100994	0.81[AMR][1000 genomes]
rs6772222	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777466	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6791501	0.91[EUR][1000 genomes]
rs6798849	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6803681	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807862	0.90[EUR][1000 genomes]
rs73232711	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621642	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622662	0.84[EUR][1000 genomes]
rs7623762	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs7623977	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7628728	0.83[YRI][hapmap]
rs7631245	0.88[CHB][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs7635768	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637826	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638459	1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639403	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641514	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642332	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7646197	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7647291	0.81[YRI][hapmap]
rs7653309	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772	0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs936339	0.83[EUR][1000 genomes]
rs953239	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs953641	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes]
rs9754885	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9758429	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9784320	0.81[EUR][1000 genomes]
rs9824476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9835135	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836269	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9841007	0.81[EUR][1000 genomes]
rs9846406	0.81[EUR][1000 genomes]
rs9849461	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850734	0.84[EUR][1000 genomes]
rs9851381	0.86[CEU][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9864230	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9868886	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142468200-142511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:142468400-142525200	Weak transcription	Fetal Brain Male	brain
4	chr3:142468400-142526800	Weak transcription	NHDF-Ad	bronchial
5	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
6	chr3:142468600-142525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:142468800-142513200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:142487400-142513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:142488800-142527000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:142490200-142529400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:142490400-142522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:142495400-142527000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:142497600-142514200	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:142498600-142517400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:142498600-142522800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:142498600-142526800	Weak transcription	Osteobl	bone
18	chr3:142499000-142527000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:142501600-142525000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:142501600-142525600	Weak transcription	Fetal Stomach	stomach
22	chr3:142501800-142518400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:142501800-142521400	Weak transcription	Ovary	ovary
24	chr3:142501800-142527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:142501800-142528000	Weak transcription	Left Ventricle	heart
26	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
27	chr3:142502000-142511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:142502000-142514000	Weak transcription	HSMM	muscle
29	chr3:142502000-142521400	Weak transcription	Adipose Nuclei	Adipose
30	chr3:142502000-142529400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:142502400-142514200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:142502400-142522800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:142504000-142511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:142504000-142521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:142504200-142512800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:142504200-142523200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:142507000-142521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:142508800-142510600	Enhancers	Fetal Intestine Large	intestine
39	chr3:142509000-142511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:142509200-142511000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:142509600-142513200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:142509800-142510600	Enhancers	HepG2	liver
43	chr3:142510200-142510400	Enhancers	A549	lung

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