Variant report

Variant	rs9841007
Chromosome Location	chr3:142541687-142541688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11717993	0.81[EUR][1000 genomes]
rs1382688	0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs1871349	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2033912	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs2177398	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs2354856	0.82[JPT][hapmap]
rs28372064	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28658009	0.81[EUR][1000 genomes]
rs28661660	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28689551	0.81[EUR][1000 genomes]
rs34076811	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34445140	0.81[EUR][1000 genomes]
rs3844273	1.00[CEU][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4643748	0.81[EUR][1000 genomes]
rs55722370	0.81[EUR][1000 genomes]
rs55952834	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56666685	0.80[EUR][1000 genomes]
rs59108985	0.81[EUR][1000 genomes]
rs60294656	0.81[EUR][1000 genomes]
rs60319320	0.81[EUR][1000 genomes]
rs60752859	0.81[EUR][1000 genomes]
rs6440108	0.81[EUR][1000 genomes]
rs6772222	0.81[EUR][1000 genomes]
rs6777466	0.81[EUR][1000 genomes]
rs6791501	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803681	0.81[EUR][1000 genomes]
rs6807862	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73232711	0.80[EUR][1000 genomes]
rs7621642	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7623762	0.81[JPT][hapmap]
rs7631245	1.00[CEU][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs7637846	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs7638459	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7639403	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7641514	0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs7772	0.80[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs953641	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs9784320	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9815607	0.93[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs9824476	0.81[EUR][1000 genomes]
rs9835135	0.81[EUR][1000 genomes]
rs9836269	0.81[EUR][1000 genomes]
rs9846406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849461	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs9850734	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864230	0.81[EUR][1000 genomes]
rs9868886	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
3	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:142527600-142547400	Weak transcription	A549	lung
9	chr3:142528400-142569400	Weak transcription	Left Ventricle	heart
10	chr3:142534400-142547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:142535800-142559200	Weak transcription	Aorta	Aorta
12	chr3:142538000-142547600	Weak transcription	Liver	Liver
13	chr3:142539800-142542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:142540400-142555800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:142541600-142542200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:142541600-142543600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:142541600-142545400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:142541600-142545600	Weak transcription	Adipose Nuclei	Adipose

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