Variant report

Variant	rs9868886
Chromosome Location	chr3:142527090-142527091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142526371..142529664-chr3:142531134..142533602,3	K562	blood:
2	chr3:142517462..142521813-chr3:142523317..142528126,6	K562	blood:
3	chr3:142517462..142519257-chr3:142525193..142528126,2	K562	blood:
4	chr3:142526371..142529815-chr3:142530861..142533602,4	K562	blood:

Variant related genes	Relation type
ENSG00000251787	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1132030	0.86[EUR][1000 genomes]
rs11715459	0.83[CHB][hapmap]
rs11717993	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11915805	0.83[ASN][1000 genomes]
rs1382688	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1871349	0.90[EUR][1000 genomes]
rs2033912	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2049328	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2177398	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2354856	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28524951	0.83[EUR][1000 genomes]
rs28658009	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28661660	0.90[EUR][1000 genomes]
rs28689551	0.99[EUR][1000 genomes]
rs34076811	0.92[EUR][1000 genomes]
rs34445140	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35467195	0.81[ASN][1000 genomes]
rs35862982	0.83[ASN][1000 genomes]
rs3821647	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4259003	0.87[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs4530572	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45497994	0.86[EUR][1000 genomes]
rs4643748	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs55722370	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55952834	0.81[EUR][1000 genomes]
rs56666685	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56775607	0.83[ASN][1000 genomes]
rs57026466	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59108985	0.99[EUR][1000 genomes]
rs60294656	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60319320	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60752859	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6440104	0.83[CHB][hapmap]
rs6440108	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs6440110	0.96[EUR][1000 genomes]
rs66897945	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6772222	0.99[EUR][1000 genomes]
rs6777466	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6791501	0.92[EUR][1000 genomes]
rs6798849	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6803681	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs6807862	0.90[EUR][1000 genomes]
rs73232711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7621642	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7622662	0.85[EUR][1000 genomes]
rs7623762	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7623977	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7631245	0.88[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7635768	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637826	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637846	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7638459	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7639403	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7641514	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7642332	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7646197	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653309	0.96[EUR][1000 genomes]
rs7772	0.92[EUR][1000 genomes]
rs936339	0.83[EUR][1000 genomes]
rs953239	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs953641	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs9754885	0.85[EUR][1000 genomes]
rs9758429	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9784320	0.80[EUR][1000 genomes]
rs9815607	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9824476	0.99[EUR][1000 genomes]
rs9835135	0.99[EUR][1000 genomes]
rs9836269	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs9841007	0.80[EUR][1000 genomes]
rs9846406	0.80[EUR][1000 genomes]
rs9849461	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs9850734	0.83[EUR][1000 genomes]
rs9851381	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs9864230	1.00[CEU][hapmap];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:142490200-142529400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:142501800-142528000	Weak transcription	Left Ventricle	heart
6	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
7	chr3:142502000-142529400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:142510400-142527200	Weak transcription	A549	lung
9	chr3:142513600-142527200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
11	chr3:142515000-142530800	Weak transcription	HSMM	muscle
12	chr3:142518800-142527200	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:142519800-142530000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:142521400-142528800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:142522400-142530000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:142522800-142528600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:142523000-142528200	Weak transcription	Ovary	ovary
20	chr3:142523800-142527200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:142523800-142539400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:142524000-142528600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:142524000-142530600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:142524000-142531400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:142525000-142538600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:142525200-142527200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:142525200-142539000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:142526600-142529200	Strong transcription	Adipose Nuclei	Adipose
32	chr3:142526600-142534800	Weak transcription	Liver	Liver
33	chr3:142526800-142527200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:142526800-142527200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:142526800-142527200	Enhancers	NHDF-Ad	bronchial
36	chr3:142526800-142527200	Enhancers	Osteobl	bone
37	chr3:142526800-142527400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:142526800-142527400	Enhancers	NH-A	brain
39	chr3:142526800-142527600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:142526800-142527600	Enhancers	HMEC	breast
41	chr3:142526800-142527600	Enhancers	NHEK	skin
42	chr3:142526800-142528200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:142527000-142527200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:142527000-142527200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr3:142527000-142527200	Enhancers	K562	blood
46	chr3:142527000-142527400	Genic enhancers	Muscle Satellite Cultured Cells	--
47	chr3:142527000-142527400	Enhancers	Brain Angular Gyrus	brain
48	chr3:142527000-142527400	Enhancers	Brain Anterior Caudate	brain
49	chr3:142527000-142527600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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