Variant report

Variant	rs55952834
Chromosome Location	chr3:142542741-142542742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1871349	0.85[EUR][1000 genomes]
rs28372064	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28661660	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34076811	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3844273	0.94[EUR][1000 genomes]
rs56666685	0.81[EUR][1000 genomes]
rs6791501	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807862	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73232711	0.81[EUR][1000 genomes]
rs7631245	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7637846	0.81[EUR][1000 genomes]
rs7641514	0.81[EUR][1000 genomes]
rs7772	0.88[EUR][1000 genomes]
rs9784320	0.99[EUR][1000 genomes]
rs9841007	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846406	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9850734	0.86[ASN][1000 genomes]
rs9868886	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
3	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:142527600-142547400	Weak transcription	A549	lung
9	chr3:142528400-142569400	Weak transcription	Left Ventricle	heart
10	chr3:142534400-142547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:142535800-142559200	Weak transcription	Aorta	Aorta
12	chr3:142538000-142547600	Weak transcription	Liver	Liver
13	chr3:142540400-142555800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:142541600-142543600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:142541600-142545400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:142541600-142545600	Weak transcription	Adipose Nuclei	Adipose
17	chr3:142542200-142543000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:142542200-142543400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:142542600-142568200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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