Variant report

Variant	rs1871349
Chromosome Location	chr3:142535409-142535410
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142533068..142536166-chr3:142536773..142539169,3	MCF-7	breast:
2	chr3:142535398..142538098-chr3:142539091..142541502,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11717993	0.91[EUR][1000 genomes]
rs1382688	0.94[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1604	0.83[ASN][1000 genomes]
rs2033912	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177398	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2354856	0.88[EUR][1000 genomes]
rs28372064	0.82[EUR][1000 genomes]
rs28524951	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28658009	0.91[EUR][1000 genomes]
rs28661660	0.97[EUR][1000 genomes]
rs28689551	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34076811	0.97[EUR][1000 genomes]
rs34445140	0.91[EUR][1000 genomes]
rs3844273	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4539980	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs4643748	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55722370	0.91[EUR][1000 genomes]
rs55722917	0.81[ASN][1000 genomes]
rs55952834	0.85[EUR][1000 genomes]
rs56666685	0.90[EUR][1000 genomes]
rs57026466	0.88[EUR][1000 genomes]
rs59108985	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60294656	0.91[EUR][1000 genomes]
rs60319320	0.91[EUR][1000 genomes]
rs60752859	0.91[EUR][1000 genomes]
rs6440107	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6440108	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6440110	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66897945	0.88[EUR][1000 genomes]
rs6772222	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6777466	0.91[EUR][1000 genomes]
rs6784998	0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6790959	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs6791501	0.97[EUR][1000 genomes]
rs6798849	0.88[EUR][1000 genomes]
rs6803681	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6807862	0.95[EUR][1000 genomes]
rs73232711	0.90[EUR][1000 genomes]
rs7621642	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7622662	0.80[EUR][1000 genomes]
rs7623977	0.88[EUR][1000 genomes]
rs7626908	0.82[ASN][1000 genomes]
rs7628728	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7631245	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7635768	0.83[EUR][1000 genomes]
rs7637826	0.83[EUR][1000 genomes]
rs7637846	0.90[EUR][1000 genomes]
rs7638459	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7639403	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7641514	0.90[EUR][1000 genomes]
rs7642332	0.88[EUR][1000 genomes]
rs7642969	0.84[ASN][1000 genomes]
rs7644704	0.83[ASN][1000 genomes]
rs7646197	0.88[EUR][1000 genomes]
rs7647291	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7653309	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772	1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs936339	0.81[EUR][1000 genomes]
rs9758429	0.88[EUR][1000 genomes]
rs9784320	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9815607	0.91[EUR][1000 genomes]
rs9820721	0.82[ASN][1000 genomes]
rs9824476	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9835135	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9836269	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9841007	0.86[EUR][1000 genomes]
rs9846406	0.86[EUR][1000 genomes]
rs9849461	0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9850734	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9851381	0.95[CHB][hapmap]
rs9864230	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9868886	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
3	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
4	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:142523800-142539400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:142525000-142538600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:142525200-142539000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:142527600-142547400	Weak transcription	A549	lung
13	chr3:142528200-142536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:142528400-142569400	Weak transcription	Left Ventricle	heart
15	chr3:142531000-142541600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:142531000-142541600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:142533400-142539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:142534400-142547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:142534800-142538000	Strong transcription	Liver	Liver
20	chr3:142534800-142538400	Strong transcription	Adipose Nuclei	Adipose

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