Variant report

Variant	rs3844273
Chromosome Location	chr3:142532113-142532114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142526371..142529664-chr3:142531134..142533602,3	K562	blood:
2	chr3:142526371..142529815-chr3:142530861..142533602,4	K562	blood:
3	chr12:115523514..115524176-chr3:142531651..142532450,2	MCF-7	breast:
4	chr3:142531915..142534072-chr3:142735480..142737048,2	K562	blood:

Variant related genes	Relation type
ENSG00000163714	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1382688	0.95[CHB][hapmap];0.86[CHD][hapmap];0.80[LWK][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs1604	0.82[ASN][1000 genomes]
rs1871349	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033912	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs2177398	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs28372064	0.89[EUR][1000 genomes]
rs28661660	0.83[EUR][1000 genomes]
rs28689551	0.88[ASN][1000 genomes]
rs34076811	0.83[EUR][1000 genomes]
rs3821647	0.81[TSI][hapmap]
rs4259003	0.89[MEX][hapmap];0.81[TSI][hapmap]
rs4539980	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs4643748	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs55952834	0.94[EUR][1000 genomes]
rs59108985	0.88[ASN][1000 genomes]
rs6440107	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs6440108	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6440110	0.88[ASN][1000 genomes]
rs6772222	0.88[ASN][1000 genomes]
rs6784998	0.90[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs6790959	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6791501	0.83[EUR][1000 genomes]
rs6803681	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6807862	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7621642	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs7626908	0.80[ASN][1000 genomes]
rs7628728	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7631245	1.00[CEU][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7637846	0.80[EUR][1000 genomes]
rs7638459	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs7639403	0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs7641514	0.89[MEX][hapmap];0.86[TSI][hapmap]
rs7642969	0.82[ASN][1000 genomes]
rs7644704	0.82[ASN][1000 genomes]
rs7647291	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7653309	0.88[ASN][1000 genomes]
rs7772	0.80[CEU][hapmap];0.81[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs953641	0.84[TSI][hapmap]
rs9784320	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9815607	0.94[MEX][hapmap];0.86[TSI][hapmap]
rs9820721	0.81[ASN][1000 genomes]
rs9824476	0.88[ASN][1000 genomes]
rs9835135	0.87[ASN][1000 genomes]
rs9836269	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9841007	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9846406	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9849461	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.87[ASN][1000 genomes]
rs9851381	0.90[CHB][hapmap]
rs9864230	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
3	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
4	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:142523800-142539400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:142525000-142538600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:142525200-142539000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:142526600-142534800	Weak transcription	Liver	Liver
13	chr3:142527600-142547400	Weak transcription	A549	lung
14	chr3:142528200-142536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:142528400-142569400	Weak transcription	Left Ventricle	heart
16	chr3:142529200-142534800	Weak transcription	Adipose Nuclei	Adipose
17	chr3:142531000-142541600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:142531000-142541600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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