Variant report

Variant	rs6440110
Chromosome Location	chr3:142526978-142526979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142526371..142529664-chr3:142531134..142533602,3	K562	blood:
2	chr3:142517462..142521813-chr3:142523317..142528126,6	K562	blood:
3	chr3:142517462..142519257-chr3:142525193..142528126,2	K562	blood:
4	chr3:142526371..142529815-chr3:142530861..142533602,4	K562	blood:

Variant related genes	Relation type
ENSG00000251787	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1132030	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11717993	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1382688	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604	0.90[ASN][1000 genomes]
rs1871349	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2033912	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177398	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2354856	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28524951	0.81[EUR][1000 genomes]
rs28658009	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28661660	0.88[EUR][1000 genomes]
rs28689551	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34076811	0.88[EUR][1000 genomes]
rs34445140	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3821647	0.83[EUR][1000 genomes]
rs3844273	0.88[ASN][1000 genomes]
rs4259003	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4530572	0.85[EUR][1000 genomes]
rs4539980	0.87[ASN][1000 genomes]
rs45497994	0.84[EUR][1000 genomes]
rs4643748	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55722370	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55722917	0.88[ASN][1000 genomes]
rs56666685	0.96[EUR][1000 genomes]
rs57026466	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59108985	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60294656	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60319320	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60752859	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6440107	0.88[ASN][1000 genomes]
rs6440108	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66897945	0.94[EUR][1000 genomes]
rs6772222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6777466	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6784998	0.88[ASN][1000 genomes]
rs6790959	0.90[ASN][1000 genomes]
rs6791501	0.88[EUR][1000 genomes]
rs6798849	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803681	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807862	0.88[EUR][1000 genomes]
rs73232711	0.96[EUR][1000 genomes]
rs7621642	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622662	0.81[EUR][1000 genomes]
rs7623977	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7626908	0.88[ASN][1000 genomes]
rs7628728	0.90[ASN][1000 genomes]
rs7635768	0.89[EUR][1000 genomes]
rs7637826	0.89[EUR][1000 genomes]
rs7637846	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7638459	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7639403	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7641514	0.96[EUR][1000 genomes]
rs7642332	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7644704	0.90[ASN][1000 genomes]
rs7646197	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7647291	0.90[ASN][1000 genomes]
rs7653309	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772	0.88[EUR][1000 genomes]
rs9754885	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9758429	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9784320	0.80[ASN][1000 genomes]
rs9815607	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9820721	0.89[ASN][1000 genomes]
rs9823836	0.83[ASN][1000 genomes]
rs9824476	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9835135	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9836269	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9849461	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9850734	0.85[EUR][1000 genomes]
rs9851381	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9861598	0.84[ASN][1000 genomes]
rs9864230	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865053	0.84[ASN][1000 genomes]
rs9868886	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:142488800-142527000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:142490200-142529400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:142495400-142527000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:142499000-142527000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:142501800-142527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:142501800-142528000	Weak transcription	Left Ventricle	heart
10	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
11	chr3:142502000-142529400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:142510400-142527200	Weak transcription	A549	lung
13	chr3:142513600-142527200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
15	chr3:142515000-142530800	Weak transcription	HSMM	muscle
16	chr3:142515600-142527000	Weak transcription	K562	blood
17	chr3:142518800-142527200	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:142519800-142530000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:142521400-142528800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:142522400-142530000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:142522800-142528600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:142523000-142528200	Weak transcription	Ovary	ovary
25	chr3:142523800-142527200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:142523800-142539400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:142524000-142527000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:142524000-142528600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:142524000-142530600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:142524000-142531400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:142525000-142538600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:142525000-142543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:142525200-142527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:142525200-142527200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:142525200-142539000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:142526600-142529200	Strong transcription	Adipose Nuclei	Adipose
39	chr3:142526600-142534800	Weak transcription	Liver	Liver
40	chr3:142526800-142527200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:142526800-142527200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:142526800-142527200	Enhancers	NHDF-Ad	bronchial
43	chr3:142526800-142527200	Enhancers	Osteobl	bone
44	chr3:142526800-142527400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:142526800-142527400	Enhancers	NH-A	brain
46	chr3:142526800-142527600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:142526800-142527600	Enhancers	HMEC	breast
48	chr3:142526800-142527600	Enhancers	NHEK	skin
49	chr3:142526800-142528200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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