Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1871349	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2033912	0.85[JPT][hapmap]
rs2177398	0.85[JPT][hapmap]
rs3844273	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4539980	0.80[JPT][hapmap]
rs4643748	0.85[JPT][hapmap]
rs6440107	0.85[JPT][hapmap]
rs6440108	0.85[JPT][hapmap]
rs6790959	0.85[JPT][hapmap]
rs6803681	0.85[JPT][hapmap]
rs7621642	0.85[JPT][hapmap]
rs7628728	0.85[JPT][hapmap]
rs7638459	0.85[JPT][hapmap]
rs7639403	0.85[JPT][hapmap]
rs7647291	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7772	0.84[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9784320	0.92[ASN][1000 genomes]
rs9836269	0.85[JPT][hapmap]
rs9849461	0.85[JPT][hapmap]
rs9864230	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000631	chr3:142516367-142572058	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
3	chr3:142519000-142572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:142522200-142551800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:142524800-142561000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:142525000-142555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:142527600-142547400	Weak transcription	A549	lung
8	chr3:142528400-142569400	Weak transcription	Left Ventricle	heart
9	chr3:142534400-142547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:142535800-142559200	Weak transcription	Aorta	Aorta
11	chr3:142538000-142547600	Weak transcription	Liver	Liver
12	chr3:142540400-142555800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:142542600-142568200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:142545200-142546400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:142545400-142546600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:142545600-142546400	Strong transcription	Adipose Nuclei	Adipose
17	chr3:142546200-142548800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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