Variant report

Variant	rs35500445
Chromosome Location	chr7:117442406-117442407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17140428	1.00[EUR][1000 genomes]
rs34090296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34128994	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34184681	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34242801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34338088	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34469059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34491454	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34505144	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34844482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35160894	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35349079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35410407	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35441392	1.00[EUR][1000 genomes]
rs35522360	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35618845	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35714028	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35720191	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35774527	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35813124	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35894760	1.00[EUR][1000 genomes]
rs35918397	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35987251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35997432	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36011009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36036225	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117421400-117444400	Weak transcription	Fetal Heart	heart
3	chr7:117428400-117448600	Weak transcription	Fetal Kidney	kidney
4	chr7:117431800-117447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
6	chr7:117432400-117447600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:117432400-117447800	Weak transcription	Brain Germinal Matrix	brain
8	chr7:117432600-117446000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:117432600-117446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:117432600-117447600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:117432600-117447800	Weak transcription	Fetal Lung	lung
12	chr7:117432600-117448800	Weak transcription	Fetal Intestine Small	intestine
13	chr7:117432800-117445200	Weak transcription	Fetal Brain Female	brain
14	chr7:117432800-117446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:117432800-117447600	Weak transcription	Adipose Nuclei	Adipose
16	chr7:117432800-117448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
18	chr7:117433800-117444000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:117433800-117444000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:117433800-117447800	Weak transcription	Esophagus	oesophagus
21	chr7:117434200-117447000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:117434800-117445400	Weak transcription	Brain Anterior Caudate	brain
23	chr7:117434800-117447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:117437400-117444800	Weak transcription	Pancreas	Pancrea
25	chr7:117437400-117445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:117437600-117443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:117437600-117447800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:117440400-117445200	Weak transcription	Brain Substantia Nigra	brain
30	chr7:117441000-117445400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:117441200-117444600	Weak transcription	Brain Angular Gyrus	brain
32	chr7:117441400-117443000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:117441600-117443200	Weak transcription	NHLF	lung
34	chr7:117441600-117445400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:117441600-117447200	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:117441800-117442800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr7:117441800-117443000	Weak transcription	Fetal Brain Male	brain

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