Variant report

Variant	rs35349079
Chromosome Location	chr7:117440387-117440388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117438508..117441422-chr7:117442671..117444866,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10227037	1.00[ASN][1000 genomes]
rs10231200	1.00[ASN][1000 genomes]
rs10235887	1.00[ASN][1000 genomes]
rs10249282	1.00[ASN][1000 genomes]
rs10249647	1.00[ASN][1000 genomes]
rs10250116	1.00[ASN][1000 genomes]
rs10258876	1.00[ASN][1000 genomes]
rs10277715	1.00[ASN][1000 genomes]
rs10279510	1.00[ASN][1000 genomes]
rs11505934	1.00[ASN][1000 genomes]
rs17140401	1.00[ASN][1000 genomes]
rs17140426	1.00[ASN][1000 genomes]
rs17140428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403532	1.00[ASN][1000 genomes]
rs28458827	1.00[ASN][1000 genomes]
rs28460732	1.00[ASN][1000 genomes]
rs28491601	1.00[ASN][1000 genomes]
rs28626909	1.00[ASN][1000 genomes]
rs34090296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34128994	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184681	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34242801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34338088	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491454	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505144	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680574	1.00[ASN][1000 genomes]
rs34739284	1.00[ASN][1000 genomes]
rs34782757	1.00[ASN][1000 genomes]
rs34844482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35160894	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35191087	1.00[ASN][1000 genomes]
rs35280089	1.00[ASN][1000 genomes]
rs35309708	1.00[ASN][1000 genomes]
rs35410407	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35441392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492426	1.00[ASN][1000 genomes]
rs35500445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35522360	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35618845	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35720191	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35731674	1.00[ASN][1000 genomes]
rs35774527	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35813124	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838987	1.00[ASN][1000 genomes]
rs35894760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918397	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35987251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35997432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036225	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946763	1.00[ASN][1000 genomes]
rs6954037	1.00[ASN][1000 genomes]
rs6962570	1.00[ASN][1000 genomes]
rs6977929	1.00[ASN][1000 genomes]
rs7781185	1.00[ASN][1000 genomes]
rs7781470	1.00[ASN][1000 genomes]
rs7800765	1.00[ASN][1000 genomes]
rs9969206	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117421400-117444400	Weak transcription	Fetal Heart	heart
3	chr7:117428400-117448600	Weak transcription	Fetal Kidney	kidney
4	chr7:117431800-117447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
6	chr7:117432400-117447600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:117432400-117447800	Weak transcription	Brain Germinal Matrix	brain
8	chr7:117432600-117446000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:117432600-117446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:117432600-117447600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:117432600-117447800	Weak transcription	Fetal Lung	lung
12	chr7:117432600-117448800	Weak transcription	Fetal Intestine Small	intestine
13	chr7:117432800-117441000	Weak transcription	NHLF	lung
14	chr7:117432800-117445200	Weak transcription	Fetal Brain Female	brain
15	chr7:117432800-117446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:117432800-117447600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:117432800-117448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
19	chr7:117433800-117444000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:117433800-117444000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:117433800-117447800	Weak transcription	Esophagus	oesophagus
22	chr7:117434200-117447000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:117434800-117445400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:117434800-117447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:117437400-117440800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:117437400-117444800	Weak transcription	Pancreas	Pancrea
27	chr7:117437400-117445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:117437600-117440400	Weak transcription	Fetal Brain Male	brain
30	chr7:117437600-117443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:117437600-117447800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:117439600-117440400	Enhancers	Brain Substantia Nigra	brain
33	chr7:117439600-117441200	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:117439600-117441600	Enhancers	Brain Hippocampus Middle	brain
35	chr7:117439800-117441800	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr7:117440000-117441200	Enhancers	Brain Angular Gyrus	brain
37	chr7:117440000-117441400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr7:117440200-117441000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links