Variant report

Variant	rs34469059
Chromosome Location	chr7:117412088-117412089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:117412018-117412119	HepG2	liver:	n/a	chr7:117412040-117412049 chr7:117412038-117412049 chr7:117412035-117412050
2	MYC	chr7:117412038-117412115	K562	blood:	n/a	chr7:117412040-117412049 chr7:117412038-117412049
3	MAX	chr7:117411882-117412131	NB4	blood:	n/a	chr7:117412040-117412049 chr7:117412038-117412049 chr7:117412035-117412050
4	MAZ	chr7:117412020-117412126	K562	blood:	n/a	chr7:117412040-117412049 chr7:117412038-117412049 chr7:117412035-117412050
5	USF1	chr7:117411948-117412106	HepG2	liver:	n/a	n/a
6	MAX	chr7:117411867-117412223	K562	blood:	n/a	chr7:117412040-117412049 chr7:117412038-117412049 chr7:117412035-117412050

Variant related genes	Relation type
CTTNBP2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10227037	1.00[ASN][1000 genomes]
rs10231200	1.00[ASN][1000 genomes]
rs10235887	1.00[ASN][1000 genomes]
rs10249282	1.00[ASN][1000 genomes]
rs10249647	1.00[ASN][1000 genomes]
rs10250116	1.00[ASN][1000 genomes]
rs10258876	1.00[ASN][1000 genomes]
rs10277715	1.00[ASN][1000 genomes]
rs10279510	1.00[ASN][1000 genomes]
rs11505934	1.00[ASN][1000 genomes]
rs17140401	1.00[ASN][1000 genomes]
rs17140426	1.00[ASN][1000 genomes]
rs17140428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403532	1.00[ASN][1000 genomes]
rs28458827	1.00[ASN][1000 genomes]
rs28460732	1.00[ASN][1000 genomes]
rs28491601	1.00[ASN][1000 genomes]
rs28626909	1.00[ASN][1000 genomes]
rs34090296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34128994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184681	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34242801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34338088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680574	1.00[ASN][1000 genomes]
rs34739284	1.00[ASN][1000 genomes]
rs34782757	1.00[ASN][1000 genomes]
rs34844482	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35018893	0.87[AMR][1000 genomes]
rs35160894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35191087	1.00[ASN][1000 genomes]
rs35280089	1.00[ASN][1000 genomes]
rs35309708	1.00[ASN][1000 genomes]
rs35349079	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35410407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35441392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492426	1.00[ASN][1000 genomes]
rs35500445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35522360	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35618845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714028	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35720191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35731674	1.00[ASN][1000 genomes]
rs35774527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35813124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838987	1.00[ASN][1000 genomes]
rs35894760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918397	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35987251	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35997432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011009	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946763	1.00[ASN][1000 genomes]
rs6954037	1.00[ASN][1000 genomes]
rs6962570	1.00[ASN][1000 genomes]
rs6977929	1.00[ASN][1000 genomes]
rs7781185	1.00[ASN][1000 genomes]
rs7781470	1.00[ASN][1000 genomes]
rs7800765	1.00[ASN][1000 genomes]
rs9969206	1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:117396600-117431200	Weak transcription	Aorta	Aorta
7	chr7:117396800-117421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:117397000-117431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:117397000-117431200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:117397000-117431600	Weak transcription	Ovary	ovary
11	chr7:117397200-117421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:117397200-117431200	Weak transcription	Pancreas	Pancrea
13	chr7:117398600-117431200	Weak transcription	Fetal Stomach	stomach
14	chr7:117400800-117431200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:117401400-117434000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:117402400-117419200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:117405000-117419600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:117405800-117418400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:117409200-117414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:117409200-117415200	Weak transcription	Fetal Heart	heart
21	chr7:117409200-117416200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:117409200-117416800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:117409400-117415400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:117409400-117416000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:117409600-117413200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:117409600-117413200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:117409600-117413400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:117409800-117433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:117410000-117416400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:117410200-117418400	Strong transcription	Fetal Brain Female	brain
31	chr7:117410400-117412400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr7:117410400-117412400	Strong transcription	Esophagus	oesophagus
33	chr7:117410400-117418000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:117410600-117412400	Enhancers	Brain Cingulate Gyrus	brain
35	chr7:117410600-117412600	Enhancers	Brain Hippocampus Middle	brain
36	chr7:117410600-117413400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:117410800-117412200	Enhancers	Left Ventricle	heart
38	chr7:117411000-117412200	Enhancers	Lung	lung
39	chr7:117411000-117412400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:117411200-117414200	Strong transcription	Brain Germinal Matrix	brain
41	chr7:117411400-117412200	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr7:117411400-117412600	Enhancers	Liver	Liver
43	chr7:117411400-117414600	Genic enhancers	Brain Anterior Caudate	brain
44	chr7:117411400-117418000	Strong transcription	Fetal Lung	lung
45	chr7:117411800-117412200	Enhancers	Right Ventricle	heart
46	chr7:117411800-117412600	Genic enhancers	Brain Angular Gyrus	brain
47	chr7:117411800-117413200	Enhancers	Fetal Kidney	kidney
48	chr7:117411800-117417400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:117412000-117412200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:117412000-117412200	Enhancers	Adipose Nuclei	Adipose

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