Variant report

Variant	rs35813124
Chromosome Location	chr7:117396304-117396305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116651084-116657331..7:117390750-117397080	Hela-S3	cervix:
2	7:116849860-116864942..7:117390750-117397080	Hela-S3	cervix:
3	7:116604327-116608063..7:117390750-117397080	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000228368	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10227037	1.00[ASN][1000 genomes]
rs10231200	1.00[ASN][1000 genomes]
rs10235887	1.00[ASN][1000 genomes]
rs10249282	1.00[ASN][1000 genomes]
rs10249647	1.00[ASN][1000 genomes]
rs10250116	1.00[ASN][1000 genomes]
rs10258876	1.00[ASN][1000 genomes]
rs10277715	1.00[ASN][1000 genomes]
rs10279510	1.00[ASN][1000 genomes]
rs11505934	1.00[ASN][1000 genomes]
rs17140401	1.00[ASN][1000 genomes]
rs17140426	1.00[ASN][1000 genomes]
rs17140428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403532	1.00[ASN][1000 genomes]
rs28458827	1.00[ASN][1000 genomes]
rs28460732	1.00[ASN][1000 genomes]
rs28491601	1.00[ASN][1000 genomes]
rs28626909	1.00[ASN][1000 genomes]
rs34090296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34128994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184681	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34242801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34338088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680574	1.00[ASN][1000 genomes]
rs34739284	1.00[ASN][1000 genomes]
rs34782757	1.00[ASN][1000 genomes]
rs34844482	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35018893	0.87[AMR][1000 genomes]
rs35160894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35191087	1.00[ASN][1000 genomes]
rs35280089	1.00[ASN][1000 genomes]
rs35309708	1.00[ASN][1000 genomes]
rs35349079	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35410407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35441392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492426	1.00[ASN][1000 genomes]
rs35500445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35522360	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35618845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714028	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35720191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35731674	1.00[ASN][1000 genomes]
rs35774527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838987	1.00[ASN][1000 genomes]
rs35894760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918397	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35987251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35997432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011009	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946763	1.00[ASN][1000 genomes]
rs6954037	1.00[ASN][1000 genomes]
rs6962570	1.00[ASN][1000 genomes]
rs6977929	1.00[ASN][1000 genomes]
rs7781185	1.00[ASN][1000 genomes]
rs7781470	1.00[ASN][1000 genomes]
rs7800765	1.00[ASN][1000 genomes]
rs9969206	1.00[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
5	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
8	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
10	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
11	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:117386800-117397600	Weak transcription	Fetal Brain Male	brain
14	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:117391800-117398600	Weak transcription	Fetal Intestine Large	intestine
17	chr7:117393400-117400800	Strong transcription	Fetal Brain Female	brain
18	chr7:117393600-117401000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:117393800-117396400	Enhancers	Brain Cingulate Gyrus	brain
20	chr7:117394000-117401200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:117394200-117402000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:117394400-117397800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:117394600-117398600	Strong transcription	Brain Germinal Matrix	brain
24	chr7:117394600-117402200	Weak transcription	Fetal Heart	heart
25	chr7:117394600-117402400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:117394800-117396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:117394800-117397000	Genic enhancers	Brain Angular Gyrus	brain
28	chr7:117394800-117402600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:117394800-117403000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:117395000-117396800	Strong transcription	Adipose Nuclei	Adipose
31	chr7:117395000-117397000	Genic enhancers	Brain Inferior Temporal Lobe	brain
32	chr7:117395000-117398600	Strong transcription	Fetal Stomach	stomach
33	chr7:117395000-117400600	Strong transcription	Fetal Lung	lung
34	chr7:117395000-117401800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr7:117395200-117398200	Strong transcription	NHLF	lung
36	chr7:117395200-117400800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:117395800-117396600	Strong transcription	Aorta	Aorta
38	chr7:117395800-117396800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:117395800-117397000	Strong transcription	Fetal Intestine Small	intestine
40	chr7:117395800-117397200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:117395800-117397200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:117395800-117397200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr7:117396000-117396400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:117396000-117396800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:117396000-117397000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:117396000-117397000	Strong transcription	Ovary	ovary
47	chr7:117396000-117398000	Strong transcription	Brain Anterior Caudate	brain
48	chr7:117396200-117396800	Strong transcription	Brain Hippocampus Middle	brain
49	chr7:117396200-117397200	Genic enhancers	Brain Substantia Nigra	brain
50	chr7:117396200-117397200	Enhancers	Pancreas	Pancrea

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