Variant report

Variant	rs35511158
Chromosome Location	chr1:223329052-223329053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223314512..223320175-chr1:223328849..223336149,9	MCF-7	breast:
2	chr1:223318487..223320795-chr1:223328403..223334378,5	K562	blood:

Variant related genes	Relation type
ENSG00000236846	Chromatin interaction
ENSG00000187554	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1341986	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17661703	0.96[ASN][1000 genomes]
rs1773750	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1773755	0.97[ASN][1000 genomes]
rs1773756	0.96[ASN][1000 genomes]
rs1773757	0.96[ASN][1000 genomes]
rs1773758	0.97[ASN][1000 genomes]
rs2096141	0.86[ASN][1000 genomes]
rs2096142	0.86[ASN][1000 genomes]
rs2247421	0.97[ASN][1000 genomes]
rs2353475	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2353476	0.86[ASN][1000 genomes]
rs2353477	0.85[ASN][1000 genomes]
rs2487835	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2883182	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34849527	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35442320	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5744105	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5744113	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5744129	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61837568	0.94[ASN][1000 genomes]
rs61837569	0.94[ASN][1000 genomes]
rs61837573	0.94[ASN][1000 genomes]
rs61837574	0.94[ASN][1000 genomes]
rs61837575	0.94[ASN][1000 genomes]
rs61837577	0.93[ASN][1000 genomes]
rs723960	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72743865	0.94[ASN][1000 genomes]
rs851166	0.95[ASN][1000 genomes]
rs851171	0.94[ASN][1000 genomes]
rs9442047	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9442048	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs975089	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223326800-223329200	Enhancers	Placenta	Placenta
2	chr1:223327200-223334600	Weak transcription	Fetal Thymus	thymus
3	chr1:223328600-223329800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:223329000-223331000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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