Variant report

Variant	rs61837569
Chromosome Location	chr1:223350601-223350602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223347792..223351314-chr1:223536155..223539425,4	MCF-7	breast:
2	chr1:223350173..223351734-chr1:223383258..223385619,2	MCF-7	breast:
3	chr1:223348196..223351831-chr1:223853498..223856683,4	MCF-7	breast:
4	chr1:223316299..223318079-chr1:223347833..223351056,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction
ENSG00000143502	Chromatin interaction
ENSG00000236846	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12122451	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17609948	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17661703	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773755	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1773756	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773757	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773758	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2096141	0.83[ASN][1000 genomes]
rs2096142	0.83[ASN][1000 genomes]
rs2247421	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353475	0.93[ASN][1000 genomes]
rs2353476	0.83[ASN][1000 genomes]
rs2353477	0.82[ASN][1000 genomes]
rs2883182	0.93[ASN][1000 genomes]
rs34849527	0.93[ASN][1000 genomes]
rs35442320	0.93[ASN][1000 genomes]
rs35511158	0.94[ASN][1000 genomes]
rs4140967	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5744105	0.92[ASN][1000 genomes]
rs5744113	0.90[ASN][1000 genomes]
rs5744129	0.83[ASN][1000 genomes]
rs61837564	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61837568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837573	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837574	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837575	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837576	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61837577	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67947164	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs723960	0.93[ASN][1000 genomes]
rs72743863	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72743865	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743873	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72743881	0.84[AMR][1000 genomes]
rs851166	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442047	0.96[ASN][1000 genomes]
rs9442048	0.96[ASN][1000 genomes]
rs975089	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223347800-223357600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:223348600-223352200	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:223348600-223352200	Weak transcription	Brain Substantia Nigra	brain
4	chr1:223348800-223352400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:223348800-223355400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:223349400-223351000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:223349600-223355000	Enhancers	Adipose Nuclei	Adipose
8	chr1:223349600-223355000	Enhancers	Placenta	Placenta
9	chr1:223349800-223351400	Weak transcription	Primary B cells from cord blood	blood
10	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
11	chr1:223350000-223352600	Enhancers	Fetal Muscle Leg	muscle
12	chr1:223350000-223355800	Enhancers	Fetal Thymus	thymus
13	chr1:223350200-223355400	Enhancers	Liver	Liver
14	chr1:223350400-223351400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:223350400-223351600	Active TSS	Esophagus	oesophagus
16	chr1:223350400-223352000	Enhancers	Lung	lung
17	chr1:223350600-223353000	Weak transcription	Brain Anterior Caudate	brain

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