Variant report

Variant	rs61837564
Chromosome Location	chr1:223335115-223335116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223334520..223336388-chr1:223536292..223537849,2	MCF-7	breast:
2	chr1:223332954..223335487-chr1:223336735..223338722,2	K562	blood:
3	chr1:223314512..223320175-chr1:223328849..223336149,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236846	Chromatin interaction
ENSG00000187554	Chromatin interaction
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12122451	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341986	0.99[ASN][1000 genomes]
rs1640827	0.87[ASN][1000 genomes]
rs17609948	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17661703	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1773750	0.97[ASN][1000 genomes]
rs1773755	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1773756	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1773757	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1773758	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2247421	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2487835	0.97[ASN][1000 genomes]
rs4140967	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61837568	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61837569	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61837573	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61837574	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61837575	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61837576	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61837577	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67947164	0.81[AMR][1000 genomes]
rs72743863	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743865	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72743873	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72743881	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs851166	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs851171	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs851191	0.86[ASN][1000 genomes]
rs975089	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223329200-223338600	Weak transcription	Placenta	Placenta
2	chr1:223333600-223335400	Enhancers	Primary T cells from cord blood	blood
3	chr1:223334600-223335200	Enhancers	Fetal Thymus	thymus

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