Variant report

Variant	rs61837575
Chromosome Location	chr1:223358468-223358469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223353076..223355823-chr1:223356610..223358901,2	K562	blood:
2	chr1:223357093..223359712-chr1:223361677..223364231,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226601	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12122451	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17609948	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17661703	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773755	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1773756	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773757	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773758	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2096141	0.83[ASN][1000 genomes]
rs2096142	0.83[ASN][1000 genomes]
rs2247421	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353475	0.93[ASN][1000 genomes]
rs2353476	0.83[ASN][1000 genomes]
rs2353477	0.82[ASN][1000 genomes]
rs2883182	0.93[ASN][1000 genomes]
rs34849527	0.93[ASN][1000 genomes]
rs35442320	0.93[ASN][1000 genomes]
rs35511158	0.94[ASN][1000 genomes]
rs4140967	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5744105	0.92[ASN][1000 genomes]
rs5744113	0.90[ASN][1000 genomes]
rs5744129	0.83[ASN][1000 genomes]
rs61837564	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61837568	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837569	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837573	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837574	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837576	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61837577	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67947164	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs723960	0.93[ASN][1000 genomes]
rs72743863	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743865	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743873	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743881	0.81[AMR][1000 genomes]
rs851166	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851171	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442047	0.96[ASN][1000 genomes]
rs9442048	0.96[ASN][1000 genomes]
rs975089	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223352800-223358600	Enhancers	Primary T cells from cord blood	blood
3	chr1:223353000-223362000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:223355600-223358600	Weak transcription	Esophagus	oesophagus
5	chr1:223356200-223361400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:223356600-223362000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:223357200-223362000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:223357600-223361000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:223357600-223361400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:223357600-223361600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:223357800-223358800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:223357800-223361600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:223358400-223361800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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