Variant report

Variant	rs72743863
Chromosome Location	chr1:223341055-223341056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223322701..223324209-chr1:223338729..223341132,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12122451	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341986	0.99[ASN][1000 genomes]
rs1640827	0.87[ASN][1000 genomes]
rs17609948	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17661703	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1773750	0.97[ASN][1000 genomes]
rs1773755	0.83[EUR][1000 genomes]
rs1773756	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1773757	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1773758	0.83[EUR][1000 genomes]
rs2247421	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2487835	0.97[ASN][1000 genomes]
rs4140967	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61837564	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61837568	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61837569	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61837573	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61837574	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61837575	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61837576	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61837577	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72743865	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72743873	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72743881	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs851166	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs851171	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs851191	0.86[ASN][1000 genomes]
rs975089	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223338600-223341800	Enhancers	Placenta	Placenta
2	chr1:223340000-223341200	Enhancers	Esophagus	oesophagus

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