Variant report

Variant	rs17661703
Chromosome Location	chr1:223339751-223339752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223338258..223339818-chr1:223723873..223726307,2	MCF-7	breast:
2	chr1:223322701..223324209-chr1:223338729..223341132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203697	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12122451	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1341987	0.81[ASN][1000 genomes]
rs17609948	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1773755	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773756	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773757	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773758	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2096141	0.85[ASN][1000 genomes]
rs2096142	0.85[ASN][1000 genomes]
rs2247421	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2353475	0.95[ASN][1000 genomes]
rs2353476	0.85[ASN][1000 genomes]
rs2353477	0.84[ASN][1000 genomes]
rs2883182	0.95[ASN][1000 genomes]
rs34849527	0.95[ASN][1000 genomes]
rs35442320	0.95[ASN][1000 genomes]
rs35511158	0.96[ASN][1000 genomes]
rs4140967	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5744105	0.94[ASN][1000 genomes]
rs5744113	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs5744129	0.85[ASN][1000 genomes]
rs61837564	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61837568	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837569	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837574	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837575	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837576	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61837577	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67947164	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs723960	0.95[ASN][1000 genomes]
rs72743863	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72743865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72743873	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72743881	0.88[AMR][1000 genomes]
rs851166	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs851171	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9442047	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9442048	0.98[ASN][1000 genomes]
rs975089	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223338600-223341800	Enhancers	Placenta	Placenta
2	chr1:223339600-223340000	Weak transcription	Esophagus	oesophagus

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