Variant report

Variant	rs35512316
Chromosome Location	chr6:150807872-150807873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1033446	0.83[AMR][1000 genomes]
rs11752980	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11754755	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4594964	0.85[AMR][1000 genomes]
rs60000576	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67032163	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6904218	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7753910	0.85[AMR][1000 genomes]
rs9372050	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9383825	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9383827	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9480461	0.84[AMR][1000 genomes]
rs9480463	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150806400-150808200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:150806400-150808200	Enhancers	Adipose Nuclei	Adipose
3	chr6:150806400-150808200	Enhancers	Liver	Liver
4	chr6:150806400-150808200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:150806600-150808000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:150807200-150808000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:150807400-150808000	Enhancers	Spleen	Spleen
8	chr6:150807400-150808000	Enhancers	HUVEC	blood vessel
9	chr6:150807400-150808200	Enhancers	Fetal Thymus	thymus
10	chr6:150807600-150808000	Enhancers	Brain Anterior Caudate	brain
11	chr6:150807600-150808000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:150807800-150808000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150807800-150808000	Enhancers	Fetal Muscle Leg	muscle
14	chr6:150807800-150808200	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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