Variant report

Variant	rs35520191
Chromosome Location	chr13:30376973-30376974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs12859613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12861019	0.85[EUR][1000 genomes]
rs12864739	0.85[EUR][1000 genomes]
rs12865525	0.85[EUR][1000 genomes]
rs12867537	0.85[EUR][1000 genomes]
rs12868298	0.85[EUR][1000 genomes]
rs12868469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12869325	1.00[AMR][1000 genomes]
rs12869833	0.85[EUR][1000 genomes]
rs12872768	0.81[EUR][1000 genomes]
rs12874615	0.85[EUR][1000 genomes]
rs12875231	0.81[EUR][1000 genomes]
rs12877107	0.85[EUR][1000 genomes]
rs1631987	0.85[EUR][1000 genomes]
rs166760	0.85[EUR][1000 genomes]
rs17073897	0.82[EUR][1000 genomes]
rs17073905	0.85[EUR][1000 genomes]
rs17073919	0.85[EUR][1000 genomes]
rs1747057	0.85[EUR][1000 genomes]
rs1747060	0.85[EUR][1000 genomes]
rs1747061	0.85[EUR][1000 genomes]
rs1747062	0.85[EUR][1000 genomes]
rs1747063	0.85[EUR][1000 genomes]
rs17502757	0.85[EUR][1000 genomes]
rs1772726	0.85[EUR][1000 genomes]
rs2256122	0.84[EUR][1000 genomes]
rs2476650	0.84[EUR][1000 genomes]
rs2476651	0.88[EUR][1000 genomes]
rs2761929	0.85[EUR][1000 genomes]
rs2761930	0.85[EUR][1000 genomes]
rs2761931	0.88[EUR][1000 genomes]
rs2761932	0.85[EUR][1000 genomes]
rs2761934	0.88[EUR][1000 genomes]
rs2761936	0.85[EUR][1000 genomes]
rs278031	0.85[EUR][1000 genomes]
rs278032	0.85[EUR][1000 genomes]
rs278033	0.85[EUR][1000 genomes]
rs278035	0.85[EUR][1000 genomes]
rs278036	0.85[EUR][1000 genomes]
rs278039	0.85[EUR][1000 genomes]
rs2794295	0.85[EUR][1000 genomes]
rs2794297	0.82[EUR][1000 genomes]
rs2794300	0.85[EUR][1000 genomes]
rs3118079	0.85[EUR][1000 genomes]
rs3118080	0.85[EUR][1000 genomes]
rs34114731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34129219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34232669	0.85[EUR][1000 genomes]
rs34317115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34333613	0.84[EUR][1000 genomes]
rs34726132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34837672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34943308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35042630	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35158864	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35177317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35452290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35693706	0.85[EUR][1000 genomes]
rs35727212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35735441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35828457	0.85[EUR][1000 genomes]
rs35849390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35889915	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35933528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36082926	0.85[EUR][1000 genomes]
rs57634252	0.85[EUR][1000 genomes]
rs71427282	0.85[EUR][1000 genomes]
rs71434756	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71434758	0.85[EUR][1000 genomes]
rs71434759	1.00[EUR][1000 genomes]
rs71434760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71434765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71434766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs719199	0.85[EUR][1000 genomes]
rs7985986	0.85[EUR][1000 genomes]
rs7992684	0.85[EUR][1000 genomes]
rs818763	0.85[EUR][1000 genomes]
rs818764	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30363800-30385000	Weak transcription	Left Ventricle	heart
2	chr13:30365800-30383200	Weak transcription	Ovary	ovary
3	chr13:30366200-30381400	Weak transcription	Stomach Mucosa	stomach
4	chr13:30372800-30378000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:30372800-30378000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:30373000-30377800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:30373200-30377600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:30373400-30383200	Weak transcription	Small Intestine	intestine
9	chr13:30374000-30380200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr13:30374200-30377000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:30374200-30380800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr13:30374200-30383200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:30374400-30377200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:30375200-30377200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr13:30375200-30377400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr13:30375200-30377600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr13:30375400-30383200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:30375600-30377200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr13:30375600-30377200	Enhancers	Adipose Nuclei	Adipose
20	chr13:30375600-30377600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:30375800-30377000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:30375800-30377200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr13:30375800-30377600	Enhancers	HSMM	muscle
24	chr13:30375800-30377800	Enhancers	Osteobl	bone
25	chr13:30376000-30377200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr13:30376000-30377400	Enhancers	HSMMtube	muscle
27	chr13:30376200-30377000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr13:30376200-30380400	Weak transcription	Brain Hippocampus Middle	brain
29	chr13:30376200-30380600	Weak transcription	Brain Angular Gyrus	brain
30	chr13:30376200-30381400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr13:30376200-30384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:30376400-30377000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr13:30376400-30377400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr13:30376400-30378600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:30376400-30380000	Weak transcription	Pancreas	Pancrea
36	chr13:30376400-30383200	Weak transcription	Brain Anterior Caudate	brain
37	chr13:30376400-30383400	Weak transcription	Gastric	stomach
38	chr13:30376400-30386000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr13:30376600-30377000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:30376600-30377000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:30376600-30377600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr13:30376600-30379400	Weak transcription	Psoas Muscle	Psoas
43	chr13:30376600-30380400	Weak transcription	Brain Substantia Nigra	brain
44	chr13:30376600-30380600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr13:30376600-30380600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:30376600-30381400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr13:30376600-30383600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:30376600-30383800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr13:30376600-30383800	Weak transcription	Right Atrium	heart
50	chr13:30376600-30384000	Weak transcription	Colon Smooth Muscle	Colon

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