Variant report

Variant	rs35530400
Chromosome Location	chr2:191094964-191094965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191094730..191097098-chr2:191136539..191139119,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11883584	1.00[AMR][1000 genomes]
rs11889863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899314	0.81[AFR][1000 genomes]
rs13023256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34664133	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34816431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34918997	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35046568	0.81[AFR][1000 genomes]
rs35366099	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35529089	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35865039	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35974968	0.85[AFR][1000 genomes]
rs36038433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57244571	1.00[AMR][1000 genomes]
rs60824447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60857137	0.83[AMR][1000 genomes]
rs71434687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71434688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925296	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv875619	chr2:191062951-191112241	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191052000-191108800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:191056800-191124600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:191056800-191131800	Weak transcription	NHEK	skin
4	chr2:191060000-191107000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
6	chr2:191062400-191107800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:191067600-191109200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:191073200-191109000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:191076200-191107200	Weak transcription	GM12878-XiMat	blood
10	chr2:191077000-191106800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:191077200-191100200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:191079200-191099000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:191079400-191109400	Weak transcription	NH-A	brain
14	chr2:191079800-191106600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:191081000-191107200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:191081600-191107400	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:191081800-191100200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:191081800-191108800	Weak transcription	Fetal Heart	heart
19	chr2:191082000-191096400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:191082000-191106600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:191082000-191107000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:191082000-191107000	Weak transcription	Left Ventricle	heart
23	chr2:191082000-191107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr2:191082000-191107200	Weak transcription	Brain Anterior Caudate	brain
25	chr2:191082000-191107800	Weak transcription	Pancreas	Pancrea
26	chr2:191082600-191107000	Weak transcription	Right Ventricle	heart
27	chr2:191082800-191107200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:191083800-191106800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:191084800-191106600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:191087000-191108000	Weak transcription	K562	blood
31	chr2:191088400-191106800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr2:191088400-191107000	Weak transcription	Fetal Brain Male	brain
33	chr2:191088600-191099600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:191088600-191106800	Weak transcription	HepG2	liver
35	chr2:191088800-191099400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr2:191088800-191106600	Weak transcription	Fetal Thymus	thymus
37	chr2:191088800-191106800	Weak transcription	HSMMtube	muscle
38	chr2:191088800-191107400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr2:191089000-191097000	Weak transcription	Liver	Liver
40	chr2:191089000-191097000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:191089000-191097600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:191089000-191097800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:191089000-191098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:191089000-191098200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr2:191089000-191098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr2:191089000-191098800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:191089000-191098800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr2:191089000-191099400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:191089000-191099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:191089000-191099600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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