Variant report

Variant	rs925296
Chromosome Location	chr2:191179618-191179619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191176802..191182284-chr2:191182793..191185787,7	MCF-7	breast:
2	chr2:191178498..191181645-chr2:191182317..191185126,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

rs_ID	r²[population]
rs11883584	0.83[AMR][1000 genomes]
rs11889863	0.83[AMR][1000 genomes]
rs11895650	0.83[AMR][1000 genomes]
rs13023256	0.83[AMR][1000 genomes]
rs34816431	0.83[AMR][1000 genomes]
rs35529089	0.83[AMR][1000 genomes]
rs35530400	0.83[AMR][1000 genomes]
rs35865039	0.83[AMR][1000 genomes]
rs36038433	0.83[AMR][1000 genomes]
rs57244571	0.83[AMR][1000 genomes]
rs60824447	0.83[AMR][1000 genomes]
rs60857137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71434687	0.83[AMR][1000 genomes]
rs71434688	0.83[AMR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
2	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:191115600-191182000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:191121000-191181400	Weak transcription	Brain Angular Gyrus	brain
8	chr2:191132600-191180200	Weak transcription	NH-A	brain
9	chr2:191135600-191183200	Weak transcription	Fetal Brain Male	brain
10	chr2:191137400-191183200	Weak transcription	A549	lung
11	chr2:191141800-191183000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr2:191142600-191180200	Weak transcription	Hela-S3	cervix
13	chr2:191142600-191181200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:191143000-191183000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:191145600-191183200	Weak transcription	HUVEC	blood vessel
16	chr2:191145800-191183000	Weak transcription	HMEC	breast
17	chr2:191146000-191181200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:191146000-191181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:191149200-191183200	Weak transcription	Fetal Kidney	kidney
20	chr2:191151000-191182800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:191151000-191183000	Weak transcription	Esophagus	oesophagus
22	chr2:191151400-191179800	Weak transcription	Fetal Heart	heart
23	chr2:191151400-191180800	Weak transcription	Aorta	Aorta
24	chr2:191151400-191183000	Weak transcription	Gastric	stomach
25	chr2:191151400-191183000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:191151400-191183600	Weak transcription	Thymus	Thymus
27	chr2:191152800-191180000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:191153400-191182800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:191157600-191181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:191160400-191180000	Weak transcription	Osteobl	bone
31	chr2:191160400-191181400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:191160600-191180000	Weak transcription	NHDF-Ad	bronchial
33	chr2:191161200-191181400	Weak transcription	Spleen	Spleen
34	chr2:191161400-191183600	Weak transcription	Ovary	ovary
35	chr2:191161800-191180000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:191162200-191182200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:191165000-191179800	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:191165400-191183000	Weak transcription	Fetal Brain Female	brain
39	chr2:191166200-191183200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:191166600-191182800	Weak transcription	Right Atrium	heart
41	chr2:191167000-191183000	Weak transcription	Brain Germinal Matrix	brain
42	chr2:191167200-191179800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:191167200-191182800	Weak transcription	Right Ventricle	heart
44	chr2:191167400-191180000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:191167600-191183200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr2:191168000-191183000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr2:191168000-191183200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:191168600-191183000	Weak transcription	Fetal Lung	lung
49	chr2:191170400-191180000	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:191171400-191181400	Weak transcription	Brain Substantia Nigra	brain

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