Variant report

Variant	rs35865039
Chromosome Location	chr10:28162154-28162155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11883584	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11889863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899314	0.85[AFR][1000 genomes]
rs13023256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34664133	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34816431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34918997	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35046568	0.85[AFR][1000 genomes]
rs35366099	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35529089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35530400	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35974968	0.82[AFR][1000 genomes]
rs36038433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57244571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60824447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60857137	0.83[AMR][1000 genomes]
rs71434687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71434688	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925296	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550283	chr10:28144330-28167326	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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