Variant report

Variant	rs60857137
Chromosome Location	chr2:191174606-191174607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191173738..191175735-chr2:191400654..191403444,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11883584	0.83[AMR][1000 genomes]
rs11889863	0.83[AMR][1000 genomes]
rs11895650	0.83[AMR][1000 genomes]
rs13023256	0.83[AMR][1000 genomes]
rs34816431	0.83[AMR][1000 genomes]
rs35529089	0.83[AMR][1000 genomes]
rs35530400	0.83[AMR][1000 genomes]
rs35865039	0.83[AMR][1000 genomes]
rs36038433	0.83[AMR][1000 genomes]
rs57244571	0.83[AMR][1000 genomes]
rs60824447	0.83[AMR][1000 genomes]
rs71434687	0.83[AMR][1000 genomes]
rs71434688	0.83[AMR][1000 genomes]
rs925296	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875621	chr2:191117120-191177131	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
2	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:191115600-191182000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:191121000-191181400	Weak transcription	Brain Angular Gyrus	brain
8	chr2:191123200-191177600	Weak transcription	Colonic Mucosa	Colon
9	chr2:191132600-191180200	Weak transcription	NH-A	brain
10	chr2:191135600-191183200	Weak transcription	Fetal Brain Male	brain
11	chr2:191137400-191183200	Weak transcription	A549	lung
12	chr2:191141800-191183000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:191142600-191180200	Weak transcription	Hela-S3	cervix
14	chr2:191142600-191181200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:191143000-191183000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:191145600-191183200	Weak transcription	HUVEC	blood vessel
17	chr2:191145800-191183000	Weak transcription	HMEC	breast
18	chr2:191146000-191181200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:191146000-191181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:191149200-191176600	Weak transcription	NHEK	skin
21	chr2:191149200-191183200	Weak transcription	Fetal Kidney	kidney
22	chr2:191151000-191182800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:191151000-191183000	Weak transcription	Esophagus	oesophagus
24	chr2:191151400-191179200	Weak transcription	Pancreas	Pancrea
25	chr2:191151400-191179800	Weak transcription	Fetal Heart	heart
26	chr2:191151400-191180800	Weak transcription	Aorta	Aorta
27	chr2:191151400-191183000	Weak transcription	Gastric	stomach
28	chr2:191151400-191183000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr2:191151400-191183600	Weak transcription	Thymus	Thymus
30	chr2:191151600-191174800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr2:191152800-191178000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr2:191152800-191180000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:191153400-191182800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:191157600-191181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:191160400-191180000	Weak transcription	Osteobl	bone
36	chr2:191160400-191181400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr2:191160600-191180000	Weak transcription	NHDF-Ad	bronchial
38	chr2:191161200-191181400	Weak transcription	Spleen	Spleen
39	chr2:191161400-191183600	Weak transcription	Ovary	ovary
40	chr2:191161600-191176400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr2:191161800-191175200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:191161800-191180000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:191162200-191182200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:191165000-191175800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:191165000-191179800	Weak transcription	Brain Hippocampus Middle	brain
46	chr2:191165400-191183000	Weak transcription	Fetal Brain Female	brain
47	chr2:191166200-191176600	Weak transcription	Stomach Mucosa	stomach
48	chr2:191166200-191183200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr2:191166600-191182800	Weak transcription	Right Atrium	heart
50	chr2:191167000-191175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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