Variant report

Variant	rs35542900
Chromosome Location	chr8:90926879-90926880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90926808..90928570-chr8:90964620..90967151,2	MCF-7	breast:
2	chr8:90926375..90927907-chr8:90956338..90958261,2	MCF-7	breast:
3	chr8:90913131..90919306-chr8:90925970..90937421,31	MCF-7	breast:
4	chr8:90926823..90929707-chr8:90995957..90997929,2	K562	blood:
5	chr8:90925709..90927566-chr8:90933025..90935326,2	MCF-7	breast:
6	chr8:90923270..90927785-chr8:90927910..90932487,5	K562	blood:
7	chr8:90920379..90924050-chr8:90924527..90930361,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55739772	1.00[AMR][1000 genomes]
rs58085240	1.00[AMR][1000 genomes]
rs59639352	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60379185	1.00[AMR][1000 genomes]
rs61608407	1.00[AMR][1000 genomes]
rs73696835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696836	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696838	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696841	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696852	1.00[AMR][1000 genomes]
rs7813347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90927200	Weak transcription	Spleen	Spleen
2	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
4	chr8:90915800-90927400	Weak transcription	Right Ventricle	heart
5	chr8:90915800-90930800	Weak transcription	Fetal Brain Female	brain
6	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
7	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
8	chr8:90916400-90937000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
10	chr8:90917000-90928600	Weak transcription	Brain Anterior Caudate	brain
11	chr8:90917000-90937000	Weak transcription	Psoas Muscle	Psoas
12	chr8:90917200-90927400	Weak transcription	Aorta	Aorta
13	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:90918800-90951800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:90919200-90936800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:90920600-90929200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:90921400-90929400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:90921400-90932000	Strong transcription	Hela-S3	cervix
20	chr8:90921800-90929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:90921800-90941600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:90922000-90932000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:90922000-90932000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:90922000-90932800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr8:90922200-90927200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr8:90922200-90927200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:90922200-90928000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr8:90922200-90928000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:90922200-90929400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:90922200-90929600	Strong transcription	Stomach Smooth Muscle	stomach
31	chr8:90922200-90930000	Strong transcription	HSMM	muscle
32	chr8:90922200-90932000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:90922200-90932000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr8:90922200-90932400	Strong transcription	Adipose Nuclei	Adipose
35	chr8:90922200-90932600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:90922200-90938800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr8:90922400-90940000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:90922600-90927800	Strong transcription	Fetal Lung	lung
39	chr8:90922600-90927800	Strong transcription	Osteobl	bone
40	chr8:90922600-90928000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:90922600-90929200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:90922600-90929200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:90922600-90929400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:90922600-90929400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr8:90922600-90929400	Strong transcription	HUVEC	blood vessel
46	chr8:90922600-90929600	Strong transcription	HSMMtube	muscle
47	chr8:90922600-90931600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:90922800-90929200	Strong transcription	Fetal Thymus	thymus
49	chr8:90922800-90929400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr8:90923200-90929200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links