Variant report

Variant	rs61608407
Chromosome Location	chr8:90917229-90917230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:90917019-90917532	MCF10A-Er-Src	breast:	n/a	n/a
2	TEAD4	chr8:90916802-90917232	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr8:90916797-90917277	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr8:90916935-90917472	Hela-S3	cervix:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90915875..90918641-chr8:90936584..90938506,2	MCF-7	breast:
2	chr8:90916538..90918180-chr8:90993774..90996028,2	MCF-7	breast:
3	chr8:90767168..90772413-chr8:90911120..90917480,11	K562	blood:
4	chr8:90917104..90918910-chr8:92044732..92046540,2	MCF-7	breast:
5	chr8:90767236..90773457-chr8:90912212..90919638,16	MCF-7	breast:
6	chr8:90915800..90917869-chr8:90927701..90930524,2	K562	blood:
7	chr8:90854578..90857222-chr8:90915273..90917997,2	MCF-7	breast:
8	chr8:90913046..90917912-chr8:90949306..90952418,7	MCF-7	breast:
9	chr8:90903994..90907107-chr8:90915784..90918218,3	MCF-7	breast:
10	chr8:90915281..90919071-chr8:91010882..91014336,4	MCF-7	breast:
11	chr8:90877621..90880581-chr8:90916033..90918083,2	K562	blood:
12	chr8:90916507..90918102-chr8:90963523..90965242,2	K562	blood:
13	chr8:90913007..90918207-chr8:90995257..90997906,9	MCF-7	breast:

No data

Variant related genes	Relation type
RNU6-925P	TF binding region
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction
ENSG00000104312	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35542900	1.00[AMR][1000 genomes]
rs55739772	1.00[AMR][1000 genomes]
rs58085240	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59639352	1.00[AMR][1000 genomes]
rs60379185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696835	1.00[AMR][1000 genomes]
rs73696836	1.00[AMR][1000 genomes]
rs73696838	1.00[AMR][1000 genomes]
rs73696841	1.00[AMR][1000 genomes]
rs73696852	1.00[AMR][1000 genomes]
rs7813347	1.00[AMR][1000 genomes]
rs7835616	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90913800-90917400	Active TSS	Brain Cingulate Gyrus	brain
2	chr8:90915400-90917400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:90915400-90917600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr8:90915400-90923000	Weak transcription	Lung	lung
5	chr8:90915400-90923200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:90915400-90924600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:90915400-90924600	Weak transcription	Gastric	stomach
8	chr8:90915400-90924600	Weak transcription	Pancreas	Pancrea
9	chr8:90915400-90927200	Weak transcription	Spleen	Spleen
10	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:90915600-90917400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:90915600-90917400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:90915600-90917600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr8:90915600-90917600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:90915600-90922200	Weak transcription	Left Ventricle	heart
16	chr8:90915600-90922600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:90915600-90922600	Weak transcription	Placenta	Placenta
18	chr8:90915600-90922600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:90915600-90924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:90915600-90924600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:90915600-90924800	Weak transcription	Colonic Mucosa	Colon
22	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
23	chr8:90915800-90918000	Flanking Active TSS	HUVEC	blood vessel
24	chr8:90915800-90918400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:90915800-90920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:90915800-90921800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:90915800-90922200	Weak transcription	Fetal Intestine Large	intestine
28	chr8:90915800-90922200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:90915800-90922600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr8:90915800-90922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:90915800-90922800	Weak transcription	Fetal Thymus	thymus
32	chr8:90915800-90923000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:90915800-90923000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:90915800-90923000	Weak transcription	Fetal Stomach	stomach
35	chr8:90915800-90923000	Weak transcription	Thymus	Thymus
36	chr8:90915800-90923200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:90915800-90923200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:90915800-90924400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:90915800-90927400	Weak transcription	Right Ventricle	heart
40	chr8:90915800-90930800	Weak transcription	Fetal Brain Female	brain
41	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
42	chr8:90916000-90917600	Flanking Active TSS	GM12878-XiMat	blood
43	chr8:90916000-90921400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
45	chr8:90916200-90917400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:90916200-90917400	Transcr. at gene 5' and 3'	A549	lung
47	chr8:90916200-90918000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr8:90916200-90924400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr8:90916400-90917400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:90916400-90917400	Enhancers	Fetal Kidney	kidney

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