Variant report

Variant	rs7835616
Chromosome Location	chr8:90939597-90939598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90894724..90897024-chr8:90939368..90941609,2	K562	blood:
2	chr8:90930769..90935448-chr8:90935737..90940521,5	K562	blood:
3	chr8:90939323..90942734-chr8:90943165..90947331,4	K562	blood:
4	chr8:90857125..90858886-chr8:90938973..90941194,2	MCF-7	breast:
5	chr8:90934420..90937604-chr8:90939539..90943396,5	MCF-7	breast:
6	chr8:90912438..90917560-chr8:90937819..90943443,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction
ENSG00000207359	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13312862	1.00[CHD][hapmap]
rs16902376	1.00[CHD][hapmap]
rs35542900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55739772	1.00[AMR][1000 genomes]
rs58085240	1.00[AMR][1000 genomes]
rs59639352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60379185	1.00[AMR][1000 genomes]
rs61608407	1.00[AMR][1000 genomes]
rs73696835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696836	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696852	1.00[AMR][1000 genomes]
rs7813347	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
3	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
4	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
5	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:90918800-90951800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:90921800-90941600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:90922400-90940000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:90924800-90940000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:90925200-90942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:90925400-90940600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:90925400-90941600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:90925400-90941800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:90925400-90945000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:90925400-90952000	Weak transcription	Fetal Intestine Small	intestine
19	chr8:90925400-90956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
21	chr8:90925400-90979200	Weak transcription	Gastric	stomach
22	chr8:90925600-90939600	Weak transcription	Brain Germinal Matrix	brain
23	chr8:90925600-90942200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr8:90925600-90961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
26	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:90927800-90940200	Weak transcription	Fetal Stomach	stomach
31	chr8:90927800-90945000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:90927800-90945000	Weak transcription	Fetal Lung	lung
33	chr8:90927800-90946600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:90927800-90951800	Weak transcription	Osteobl	bone
35	chr8:90927800-90963800	Weak transcription	NHEK	skin
36	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
37	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
38	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
39	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr8:90928000-90965200	Weak transcription	Fetal Kidney	kidney
41	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
42	chr8:90929200-90944800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:90929200-90961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:90929400-90939800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:90929400-90966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr8:90929600-90945000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:90929600-90946600	Weak transcription	Brain Hippocampus Middle	brain
48	chr8:90929800-90951200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:90931600-90965200	Weak transcription	HepG2	liver
50	chr8:90932000-90952400	Weak transcription	NHLF	lung

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