Variant report

Variant	rs73696852
Chromosome Location	chr8:91008255-91008256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90995472..90998496-chr8:91005962..91009208,4	MCF-7	breast:
2	chr8:90770153..90772840-chr8:91007393..91009503,2	K562	blood:
3	chr8:90993798..90996791-chr8:91007564..91009611,2	MCF-7	breast:
4	chr8:90996313..90997115-chr8:91007670..91008443,3	MCF-7	breast:
5	chr8:90993740..90998676-chr8:91006200..91009964,9	K562	blood:
6	chr8:90998510..91002003-chr8:91006940..91009288,3	MCF-7	breast:
7	chr8:90730221..90731273-chr8:91007539..91008842,5	MCF-7	breast:
8	chr8:90860238..90861141-chr8:91007229..91008461,8	MCF-7	breast:
9	chr8:90730369..90731173-chr8:91007945..91008879,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35542900	1.00[AMR][1000 genomes]
rs55739772	1.00[AMR][1000 genomes]
rs58085240	1.00[AMR][1000 genomes]
rs59639352	1.00[AMR][1000 genomes]
rs60379185	1.00[AMR][1000 genomes]
rs61608407	1.00[AMR][1000 genomes]
rs73696835	1.00[AMR][1000 genomes]
rs73696836	1.00[AMR][1000 genomes]
rs73696838	1.00[AMR][1000 genomes]
rs73696841	1.00[AMR][1000 genomes]
rs7813347	1.00[AMR][1000 genomes]
rs7835616	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91000000-91012400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91006000-91012800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:91006200-91012400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:91007600-91013200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:91008000-91012400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:91008000-91012400	Weak transcription	HepG2	liver
7	chr8:91008000-91012800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:91008200-91012800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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