Variant report

Variant	rs35574342
Chromosome Location	chr2:37788661-37788662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37779367..37783955-chr2:37786259..37791654,6	K562	blood:
2	chr2:37781860..37785625-chr2:37786304..37788972,4	K562	blood:
3	chr2:37786608..37790547-chr2:37791244..37795872,7	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10168778	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10176881	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10181174	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10184801	0.85[EUR][1000 genomes]
rs10197948	0.85[EUR][1000 genomes]
rs10208172	0.85[EUR][1000 genomes]
rs11124590	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11124592	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11687796	0.85[EUR][1000 genomes]
rs11887848	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11888402	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11895388	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12612951	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12615363	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13002383	0.81[ASN][1000 genomes]
rs13432740	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34369565	0.81[ASN][1000 genomes]
rs34752978	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35422160	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35617918	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35745581	0.82[ASN][1000 genomes]
rs35990829	0.81[ASN][1000 genomes]
rs4233923	0.82[ASN][1000 genomes]
rs4404250	0.82[ASN][1000 genomes]
rs4670208	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670730	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6544093	0.85[EUR][1000 genomes]
rs6710371	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6712065	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6730320	0.85[EUR][1000 genomes]
rs6733496	0.85[EUR][1000 genomes]
rs67348553	0.81[ASN][1000 genomes]
rs6747152	0.85[EUR][1000 genomes]
rs72795708	0.81[ASN][1000 genomes]
rs7557304	0.85[EUR][1000 genomes]
rs7560890	0.85[EUR][1000 genomes]
rs7564992	0.84[EUR][1000 genomes]
rs7587009	0.85[EUR][1000 genomes]
rs765372	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37781400-37791200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:37782000-37789200	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:37782800-37788800	Weak transcription	Spleen	Spleen
4	chr2:37783200-37788800	Weak transcription	Thymus	Thymus
5	chr2:37783400-37790800	Weak transcription	Primary T cells from cord blood	blood
6	chr2:37783400-37795600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:37784000-37789400	Enhancers	GM12878-XiMat	blood
8	chr2:37786200-37788800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:37786800-37788800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:37786800-37789000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:37786800-37790200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr2:37787000-37790200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:37787200-37790400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:37787400-37789200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:37787400-37789200	Enhancers	Adipose Nuclei	Adipose
16	chr2:37787400-37789200	Enhancers	Fetal Thymus	thymus
17	chr2:37787400-37789200	Enhancers	Left Ventricle	heart
18	chr2:37787400-37789200	Enhancers	Ovary	ovary
19	chr2:37787400-37789400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr2:37787400-37790400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:37787400-37790800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:37787400-37791600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:37787400-37792000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:37787600-37789200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:37787600-37790000	Enhancers	HMEC	breast
26	chr2:37787600-37791000	Enhancers	HUVEC	blood vessel
27	chr2:37787600-37793400	Enhancers	NHDF-Ad	bronchial
28	chr2:37787800-37788800	Weak transcription	Right Atrium	heart
29	chr2:37787800-37789000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:37787800-37789200	Enhancers	Stomach Smooth Muscle	stomach
31	chr2:37787800-37789600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr2:37788000-37789200	Enhancers	Colon Smooth Muscle	Colon
33	chr2:37788000-37789600	Enhancers	HSMM	muscle
34	chr2:37788000-37790200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:37788000-37790200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:37788000-37790800	Enhancers	NHEK	skin
37	chr2:37788000-37791400	Enhancers	Osteobl	bone
38	chr2:37788200-37789000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:37788200-37789000	Weak transcription	Fetal Brain Male	brain
40	chr2:37788200-37789000	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr2:37788200-37789200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr2:37788200-37792000	Enhancers	NHLF	lung
43	chr2:37788400-37788800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:37788400-37788800	Flanking Active TSS	NH-A	brain
45	chr2:37788400-37789000	Weak transcription	Gastric	stomach
46	chr2:37788400-37789000	Weak transcription	Psoas Muscle	Psoas
47	chr2:37788400-37789400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr2:37788400-37789600	Flanking Active TSS	A549	lung
49	chr2:37788400-37789800	Flanking Active TSS	K562	blood
50	chr2:37788400-37794800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links