Variant report

Variant	rs35582707
Chromosome Location	chr7:117590626-117590627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10244364	0.86[EUR][1000 genomes]
rs10263711	0.81[EUR][1000 genomes]
rs10267771	0.84[EUR][1000 genomes]
rs10276758	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487380	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1156954	0.91[EUR][1000 genomes]
rs34031516	0.82[EUR][1000 genomes]
rs34729439	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952555	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6961907	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727164	0.86[EUR][1000 genomes]
rs7782815	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117587000-117591800	Weak transcription	Fetal Kidney	kidney
2	chr7:117587000-117601000	Weak transcription	Fetal Lung	lung
3	chr7:117588800-117592600	Enhancers	HMEC	breast
4	chr7:117589400-117590800	Enhancers	NHEK	skin
5	chr7:117589400-117592000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:117589600-117591600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:117589800-117591600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:117590400-117591400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:117590600-117590800	Enhancers	Pancreas	Pancrea
10	chr7:117590600-117591000	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:117590600-117591200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:117590600-117591200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:117590600-117591200	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:117590600-117591600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr7:117590600-117591600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr7:117590600-117591800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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