Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117534052..117535674-chr7:117539436..117541959,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10244364	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10252771	0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10259910	0.87[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10263711	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10267771	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10276758	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10487380	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1156954	0.87[CEU][hapmap]
rs13239186	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34031516	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34212554	0.85[ASN][1000 genomes]
rs34298216	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34564710	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34729439	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35582707	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6961907	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6976111	0.86[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs727164	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7776980	0.83[CEU][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7782815	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117524800-117536200	Weak transcription	Esophagus	oesophagus
2	chr7:117529800-117535400	Weak transcription	H1 Cell Line	embryonic stem cell

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