Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10252771	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259910	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263711	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267771	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276758	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10487380	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1156954	0.88[CEU][hapmap]
rs13239186	1.00[ASN][1000 genomes]
rs34031516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34212554	0.95[ASN][1000 genomes]
rs34298216	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34564710	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34729439	0.87[EUR][1000 genomes]
rs35582707	0.86[EUR][1000 genomes]
rs6952555	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6961907	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6976111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs727164	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776980	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782815	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117524800-117536200	Weak transcription	Esophagus	oesophagus
2	chr7:117527400-117529800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:117527400-117529800	Enhancers	Fetal Brain Male	brain
4	chr7:117527400-117530000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:117527600-117529800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:117527600-117529800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:117527600-117529800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:117527600-117530200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:117528000-117529800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:117528200-117529800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:117528600-117529800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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