Variant report

Variant	rs34729439
Chromosome Location	chr7:117587887-117587888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10244364	0.87[EUR][1000 genomes]
rs10252771	0.81[EUR][1000 genomes]
rs10259910	0.81[EUR][1000 genomes]
rs10263711	0.83[EUR][1000 genomes]
rs10267771	0.85[EUR][1000 genomes]
rs10276758	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487380	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156954	0.89[EUR][1000 genomes]
rs34031516	0.84[EUR][1000 genomes]
rs34298216	0.81[EUR][1000 genomes]
rs34564710	0.81[EUR][1000 genomes]
rs35582707	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952555	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6961907	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727164	0.88[EUR][1000 genomes]
rs7776980	0.80[EUR][1000 genomes]
rs7782815	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117587000-117589800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:117587000-117591800	Weak transcription	Fetal Kidney	kidney
3	chr7:117587000-117601000	Weak transcription	Fetal Lung	lung
4	chr7:117587200-117589200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:117587400-117589400	Weak transcription	NHEK	skin
6	chr7:117587600-117588800	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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